Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P22740_001 | |
| GSMUA_Achr4P17470_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22450.1 | GSMUA_Achr1P22740_001 | AT5G35750.1 | 18642946 |
| AT1G22450.1 | GSMUA_Achr4P17470_001 | AT5G35750.1 | 18642946 |
| AT1G22450.1 | GSMUA_AchrUn_... | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P04880_001 | Banana | cytosol | 37.5 | 81.82 |
| CDX91679 | Canola | cytosol, nucleus, plastid | 45.83 | 67.54 |
| CDY41480 | Canola | cytosol, mitochondrion, nucleus | 47.02 | 66.95 |
| TraesCS2D01G171000.1 | Wheat | golgi | 54.17 | 56.17 |
| TraesCS2A01G164000.1 | Wheat | mitochondrion | 52.38 | 56.05 |
| TraesCS2B01G189900.1 | Wheat | golgi | 53.57 | 55.56 |
| KXG36718 | Sorghum | nucleus | 55.95 | 54.97 |
| Zm00001d029393_P001 | Maize | plastid | 55.36 | 54.07 |
| HORVU2Hr1G029990.1 | Barley | plasma membrane | 53.57 | 53.89 |
| Os03t0390400-01 | Rice | mitochondrion | 54.17 | 53.85 |
| KXG39229 | Sorghum | cytosol, mitochondrion, nucleus | 54.76 | 53.49 |
| GSMUA_Achr8P17630_001 | Banana | nucleus | 53.57 | 51.43 |
| Bra031391.1-P | Field mustard | cytosol, nucleus, plastid | 49.4 | 51.23 |
| CDY71646 | Canola | cytosol, nucleus, plastid | 49.4 | 51.23 |
| Solyc12g057120.1.1 | Tomato | plastid | 53.57 | 50.56 |
| CDY04815 | Canola | nucleus | 48.81 | 50.31 |
| KRH16776 | Soybean | endoplasmic reticulum, mitochondrion | 51.79 | 49.71 |
| KRH72388 | Soybean | endoplasmic reticulum | 50.6 | 48.85 |
| PGSC0003DMT400045783 | Potato | extracellular, mitochondrion | 54.17 | 48.15 |
| PGSC0003DMT400079179 | Potato | nucleus | 50.0 | 45.41 |
| Solyc04g074550.2.1 | Tomato | nucleus, plastid | 50.0 | 45.41 |
| CDY00453 | Canola | cytosol, nucleus, plastid | 49.4 | 44.86 |
| AT1G22450.1 | Thale cress | cytosol, nucleus, plastid | 50.6 | 44.5 |
| CDY46649 | Canola | cytosol, nucleus, plastid | 48.21 | 43.78 |
| VIT_13s0067g03810.t01 | Wine grape | cytosol, mitochondrion, nucleus | 46.43 | 32.64 |
| VIT_13s0067g03800.t01 | Wine grape | mitochondrion | 45.83 | 32.08 |
| Zm00001d047218_P002 | Maize | nucleus | 48.81 | 27.7 |
Protein Annotations
| Gene3D:1.10.10.140 | MapMan:2.4.5.1.7 | InterPro:Cyt_c_oxidase_su6B | InterPro:Cyt_c_oxidase_su6B_sf | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | EnsemblPlantsGene:GSMUA_Achr7G11740_001 | EnsemblPlants:GSMUA_Achr7P11740_001 | EnsemblPlants:GSMUA_Achr7T11740_001 |
| InterPro:IPR036549 | UniProt:M0TGR2 | PFAM:PD015172 | PFAM:PF02297 | PFscan:PS51808 | PANTHER:PTHR11387 |
| PANTHER:PTHR11387:SF30 | SUPFAM:SSF47694 | UniParc:UPI000296F5E8 | SEG:seg | : | : |
Description
Cytochrome c oxidase subunit 6B [Source:GMGC_GENE;Acc:GSMUA_Achr7G11740_001]
Coordinates
chr7:+:9345720..9353384
Molecular Weight (calculated)
18739.2 Da
IEP (calculated)
4.080
GRAVY (calculated)
-1.017
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MADAVPEKTP TPSEQWSLQD KGQPDLSQAT VDETAKDENP PDGSSVEVSA QMDNQTPASE VAEKSDEAPV AEEINETPEE SETESQEAAE EKPVIKIETA
101: PADFRFPTTN QTRHCFTRYI EYHRCIAAKG EGAPECDKFA KYYRSLCPSE WIERWNEQRA NGTFPGPL
101: PADFRFPTTN QTRHCFTRYI EYHRCIAAKG EGAPECDKFA KYYRSLCPSE WIERWNEQRA NGTFPGPL
001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
Arabidopsis Description
COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.