Factsheet for PGSC0003DMT400079179

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015729

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22450.1	PGSC0003DMT400015729	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g074550.2.1	Tomato	nucleus, plastid	94.59	94.59
CDX91679	Canola	cytosol, nucleus, plastid	41.62	67.54
PGSC0003DMT400029025	Potato	mitochondrion	34.05	67.02
CDY41480	Canola	cytosol, mitochondrion, nucleus	42.16	66.1
PGSC0003DMT400045783	Potato	extracellular, mitochondrion	65.95	64.55
KRH16776	Soybean	endoplasmic reticulum, mitochondrion	54.59	57.71
KRH72388	Soybean	endoplasmic reticulum	53.51	56.9
Bra031391.1-P	Field mustard	cytosol, nucleus, plastid	47.57	54.32
CDY71646	Canola	cytosol, nucleus, plastid	47.57	54.32
Zm00001d029393_P001	Maize	plastid	50.27	54.07
Os03t0390400-01	Rice	mitochondrion	49.19	53.85
TraesCS2A01G164000.1	Wheat	mitochondrion	45.41	53.5
KXG39229	Sorghum	cytosol, mitochondrion, nucleus	49.73	53.49
CDY04815	Canola	nucleus	47.03	53.37
KXG36718	Sorghum	nucleus	49.19	53.22
TraesCS2B01G189900.1	Wheat	golgi	46.49	53.09
TraesCS2D01G171000.1	Wheat	golgi	46.49	53.09
HORVU2Hr1G029990.1	Barley	plasma membrane	45.95	50.9
GSMUA_Achr7P11740_001	Banana	cytosol, mitochondrion, nucleus	45.41	50.0
CDY46649	Canola	cytosol, nucleus, plastid	48.65	48.65
GSMUA_Achr8P17630_001	Banana	nucleus	45.95	48.57
CDY00453	Canola	cytosol, nucleus, plastid	48.11	48.11
AT1G22450.1	Thale cress	cytosol, nucleus, plastid	48.65	47.12
VIT_13s0067g03810.t01	Wine grape	cytosol, mitochondrion, nucleus	47.57	36.82
VIT_13s0067g03800.t01	Wine grape	mitochondrion	47.03	36.25
Zm00001d047218_P002	Maize	nucleus	45.95	28.72

Protein Annotations

Gene3D:1.10.10.140	EntrezGene:102584243	MapMan:2.4.5.1.7	InterPro:Cyt_c_oxidase_su6B	InterPro:Cyt_c_oxidase_su6B_sf	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	InterPro:IPR036549	UniProt:M1D1D2
PFAM:PD015172	PFAM:PF02297	EnsemblPlantsGene:PGSC0003DMG402030815	PGSC:PGSC0003DMG402030815	EnsemblPlants:PGSC0003DMT400079179	PFscan:PS51808
PANTHER:PTHR11387	PANTHER:PTHR11387:SF30	SUPFAM:SSF47694	UniParc:UPI0002953121	RefSeq:XP_006363287.1	SEG:seg

Description

Cytochrome C oxidase polypeptide vib [Source:PGSC_GENE;Acc:PGSC0003DMG402030815]

Coordinates

chr4:+:64053775..64058505

Molecular Weight (calculated)

20337.0 Da

IEP (calculated)

4.102

GRAVY (calculated)

-0.827

Length

185 amino acids

Sequence
(BLAST)

001: MTAVETSNVA SLSEQYLLKD HEEKSPMTAK PVEETEVKAP SAAPAEEVIS KTEETPVVES IKIAPAPEES SEAVTESAEA SPPVEASSEE SSESTEDETS
101: GDQESAVETP EIKLETAPAD FRFPTTNQTR HCFTRYVEYH RCTAAKGEGA PECDKFAKYY RSLCPGEWVD RWNEQRENGT FPGPL

Best Arabidopsis Sequence Match ( AT1G22450.1 )
(BLAST)

001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P

Arabidopsis Description

COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.