Factsheet for Zm00001d029393_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014297_P006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22450.1	Zm00001d014297_P006	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91679	Canola	cytosol, nucleus, plastid	46.51	70.18
CDY41480	Canola	cytosol, mitochondrion, nucleus	47.09	68.64
Os03t0390400-01	Rice	mitochondrion	66.86	68.05
Bra031391.1-P	Field mustard	cytosol, nucleus, plastid	53.49	56.79
CDY71646	Canola	cytosol, nucleus, plastid	53.49	56.79
KRH16776	Soybean	endoplasmic reticulum, mitochondrion	57.56	56.57
GSMUA_Achr7P11740_001	Banana	cytosol, mitochondrion, nucleus	54.07	55.36
CDY04815	Canola	nucleus	51.16	53.99
KRH72388	Soybean	endoplasmic reticulum	54.07	53.45
Solyc12g057120.1.1	Tomato	plastid	53.49	51.69
GSMUA_Achr8P17630_001	Banana	nucleus	52.33	51.43
PGSC0003DMT400079179	Potato	nucleus	54.07	50.27
Solyc04g074550.2.1	Tomato	nucleus, plastid	52.91	49.19
AT1G22450.1	Thale cress	cytosol, nucleus, plastid	52.33	47.12
PGSC0003DMT400045783	Potato	extracellular, mitochondrion	51.74	47.09
CDY00453	Canola	cytosol, nucleus, plastid	49.42	45.95
CDY46649	Canola	cytosol, nucleus, plastid	48.84	45.41
Zm00001d047218_P002	Maize	nucleus	63.95	37.16
Zm00001d051055_P003	Maize	mitochondrion	31.98	36.67
VIT_13s0067g03810.t01	Wine grape	cytosol, mitochondrion, nucleus	48.84	35.15
VIT_13s0067g03800.t01	Wine grape	mitochondrion	47.09	33.75

Protein Annotations

Gene3D:1.10.10.140	MapMan:2.4.5.1.7	UniProt:B4FCQ4	EMBL:BT034892	InterPro:Cyt_c_oxidase_su6B	InterPro:Cyt_c_oxidase_su6B_sf
EMBL:EU954111	EMBL:EU964848	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	InterPro:IPR036549	ProteinID:ONL98645.1	PFAM:PD015172	PFAM:PF02297	PFscan:PS51808
PANTHER:PTHR11387	PANTHER:PTHR11387:SF30	SUPFAM:SSF47694	UniParc:UPI00017B67A8	EnsemblPlantsGene:Zm00001d029393	EnsemblPlants:Zm00001d029393_P001
EnsemblPlants:Zm00001d029393_T001	SEG:seg	:	:	:	:

Description

Cytochrome c oxidase subunit 6b-1

Coordinates

chr1:+:68678959..68683422

Molecular Weight (calculated)

19018.2 Da

IEP (calculated)

3.972

GRAVY (calculated)

-1.110

Length

172 amino acids

Sequence
(BLAST)

001: MAAEGKTPSL AEEYSLPPQE VPVEKAAEEK PSSGTESEAA PSTNDETPPS VEDKNGTSEV QDAAENPEAE ETNTAAEETP AVEEASETTE EEEAEKPEIK
101: IETAPADFRF PTTNQTRHCF TRYVEYHRCV AAKGEDAPEC DKFAKYYRSL CPGEWVDRWN EQRENGTFPG PL

Best Arabidopsis Sequence Match ( AT1G22450.1 )
(BLAST)

001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P

Arabidopsis Description

COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.