Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22450.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT1G22450.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46649 | Canola | cytosol, nucleus, plastid | 97.84 | 97.84 |
| CDX91679 | Canola | cytosol, nucleus, plastid | 49.73 | 80.7 |
| CDY41480 | Canola | cytosol, mitochondrion, nucleus | 49.73 | 77.97 |
| CDY29877 | Canola | cytosol | 31.89 | 75.64 |
| CDX89207 | Canola | cytosol | 31.35 | 74.36 |
| CDY04815 | Canola | nucleus | 63.78 | 72.39 |
| CDY71646 | Canola | cytosol, nucleus, plastid | 62.7 | 71.6 |
| AT1G22450.1 | Thale cress | cytosol, nucleus, plastid | 71.89 | 69.63 |
| CDY19008 | Canola | extracellular | 31.35 | 59.18 |
| TraesCS2B01G189900.1 | Wheat | golgi | 51.35 | 58.64 |
| TraesCS2D01G171000.1 | Wheat | golgi | 50.81 | 58.02 |
| TraesCS2A01G164000.1 | Wheat | mitochondrion | 47.57 | 56.05 |
| Os03t0390400-01 | Rice | mitochondrion | 50.81 | 55.62 |
| HORVU2Hr1G029990.1 | Barley | plasma membrane | 48.65 | 53.89 |
| KRH72388 | Soybean | endoplasmic reticulum | 48.11 | 51.15 |
| Solyc12g057120.1.1 | Tomato | plastid | 49.19 | 51.12 |
| KXG36718 | Sorghum | nucleus | 47.03 | 50.88 |
| KRH16776 | Soybean | endoplasmic reticulum, mitochondrion | 47.57 | 50.29 |
| KXG39229 | Sorghum | cytosol, mitochondrion, nucleus | 46.49 | 50.0 |
| PGSC0003DMT400045783 | Potato | extracellular, mitochondrion | 50.81 | 49.74 |
| Zm00001d029393_P001 | Maize | plastid | 45.95 | 49.42 |
| GSMUA_Achr7P11740_001 | Banana | cytosol, mitochondrion, nucleus | 44.86 | 49.4 |
| PGSC0003DMT400079179 | Potato | nucleus | 48.11 | 48.11 |
| Solyc04g074550.2.1 | Tomato | nucleus, plastid | 48.11 | 48.11 |
| GSMUA_Achr8P17630_001 | Banana | nucleus | 45.41 | 48.0 |
| CDX92861 | Canola | cytosol, extracellular, mitochondrion, plastid | 35.14 | 37.14 |
| VIT_13s0067g03810.t01 | Wine grape | cytosol, mitochondrion, nucleus | 46.49 | 35.98 |
| VIT_13s0067g03800.t01 | Wine grape | mitochondrion | 45.41 | 35.0 |
| CDY44662 | Canola | cytosol, mitochondrion, nucleus | 20.54 | 29.69 |
| Zm00001d047218_P002 | Maize | nucleus | 42.7 | 26.69 |
Protein Annotations
| Gene3D:1.10.10.140 | MapMan:2.4.5.1.7 | GO:A0A078EM81 | EnsemblPlants:CDY00453 | ProteinID:CDY00453 | ProteinID:CDY00453.1 |
| InterPro:Cyt_c_oxidase_su6B | InterPro:Cyt_c_oxidase_su6B_sf | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005739 | EnsemblPlantsGene:GSBRNA2T00110110001 | InterPro:IPR036549 | PFAM:PD015172 | PFAM:PF02297 | PFscan:PS51808 |
| PANTHER:PTHR11387 | PANTHER:PTHR11387:SF30 | SUPFAM:SSF47694 | UniParc:UPI0001BA421A | SEG:seg | : |
Description
BnaC07g13730D
Coordinates
chrLK031918:+:1204917..1206391
Molecular Weight (calculated)
20414.9 Da
IEP (calculated)
3.938
GRAVY (calculated)
-0.870
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESVASQTP SLSEQYHLEK EVKQDTSAKP VEVAPEVTSQ AEDVSTDKAS EESPAEEAVS AVEEKSESPP ASEEAPPAVV VEDSADETPV AVEESNDENA
101: SEEVVEETPD EIKLETAPAD FRFPTTNQTR HCFTRYIEYH RCVAAKGDDA PECDKFSKFY RSLCPGEWVD KWNEQRENGT FPGPL
101: SEEVVEETPD EIKLETAPAD FRFPTTNQTR HCFTRYIEYH RCVAAKGDDA PECDKFSKFY RSLCPGEWVD KWNEQRENGT FPGPL
001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
Arabidopsis Description
COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.