CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85293	Sorghum	cytosol	36.84	81.82
TraesCS2D01G171000.1	Wheat	golgi	70.76	74.69
TraesCS2B01G189900.1	Wheat	golgi	70.76	74.69
HORVU2Hr1G029990.1	Barley	plasma membrane	71.34	73.05
TraesCS2A01G164000.1	Wheat	mitochondrion	63.74	69.43
CDX91679	Canola	cytosol, nucleus, plastid	44.44	66.67
CDY41480	Canola	cytosol, mitochondrion, nucleus	45.61	66.1
KXG39229	Sorghum	cytosol, mitochondrion, nucleus	65.5	65.12
GSMUA_Achr7P11740_001	Banana	cytosol, mitochondrion, nucleus	54.97	55.95
CDY04815	Canola	nucleus	50.29	52.76
KRH16776	Soybean	endoplasmic reticulum, mitochondrion	53.8	52.57
Bra031391.1-P	Field mustard	cytosol, nucleus, plastid	49.12	51.85
CDY71646	Canola	cytosol, nucleus, plastid	49.12	51.85
Solyc12g057120.1.1	Tomato	plastid	53.8	51.69
GSMUA_Achr8P17630_001	Banana	nucleus	52.63	51.43
KRH72388	Soybean	endoplasmic reticulum	52.05	51.15
PGSC0003DMT400045783	Potato	extracellular, mitochondrion	54.97	49.74
PGSC0003DMT400079179	Potato	nucleus	53.22	49.19
Solyc04g074550.2.1	Tomato	nucleus, plastid	52.05	48.11
CDY00453	Canola	cytosol, nucleus, plastid	50.88	47.03
CDY46649	Canola	cytosol, nucleus, plastid	50.29	46.49
AT1G22450.1	Thale cress	cytosol, nucleus, plastid	49.12	43.98
VIT_13s0067g03810.t01	Wine grape	cytosol, mitochondrion, nucleus	47.37	33.89
VIT_13s0067g03800.t01	Wine grape	mitochondrion	45.03	32.08

Protein Annotations

Gene3D:1.10.10.140	MapMan:2.4.5.1.7	UniProt:A0A1B6QFL9	InterPro:Cyt_c_oxidase_su6B	InterPro:Cyt_c_oxidase_su6B_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0004129	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	InterPro:IPR036549	EnsemblPlants:KXG36718	ProteinID:KXG36718	ProteinID:KXG36718.1
PFAM:PD015172	PFAM:PF02297	PFscan:PS51808	PANTHER:PTHR11387	PANTHER:PTHR11387:SF30	EnsemblPlantsGene:SORBI_3002G379000
SUPFAM:SSF47694	UniParc:UPI00081AB447	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:73514313..73518343

Molecular Weight (calculated)

18971.4 Da

IEP (calculated)

4.201

GRAVY (calculated)

-0.948

Length

171 amino acids

Sequence
(BLAST)

001: MAAEGNAPSL AEEYSLPSQE VQVHNPSEEK SAVRTTAEVV PDKSAETPAA DETTVAVKET SETPEVKEPS EKPEAEDSSA AEESSEVSEE AADEKPEIKI
101: ETAPADFRFP TTNQTRHCFT RYIEYHRCVA AKGEGAPECE KFAKYYRSLC PSEWIERWNE QRENGTFPGP L

Best Arabidopsis Sequence Match ( AT1G22450.1 )
(BLAST)

001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P

Arabidopsis Description

COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.