Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0057g00690.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22450.1 | VIT_12s0057g00690.t01 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0067g03800.t01 | Wine grape | mitochondrion | 86.61 | 86.25 |
| VIT_11s0037g01120.t01 | Wine grape | cytosol | 25.52 | 79.22 |
| CDX91679 | Canola | cytosol, nucleus, plastid | 31.8 | 66.67 |
| CDY41480 | Canola | cytosol, mitochondrion, nucleus | 32.64 | 66.1 |
| CDY04815 | Canola | nucleus | 36.82 | 53.99 |
| KRH16776 | Soybean | endoplasmic reticulum, mitochondrion | 39.33 | 53.71 |
| Bra031391.1-P | Field mustard | cytosol, nucleus, plastid | 36.4 | 53.7 |
| CDY71646 | Canola | cytosol, nucleus, plastid | 36.4 | 53.7 |
| KRH72388 | Soybean | endoplasmic reticulum | 38.49 | 52.87 |
| TraesCS2A01G164000.1 | Wheat | mitochondrion | 34.31 | 52.23 |
| TraesCS2D01G171000.1 | Wheat | golgi | 33.89 | 50.0 |
| TraesCS2B01G189900.1 | Wheat | golgi | 33.89 | 50.0 |
| HORVU2Hr1G029990.1 | Barley | plasma membrane | 34.31 | 49.1 |
| Zm00001d029393_P001 | Maize | plastid | 35.15 | 48.84 |
| Os03t0390400-01 | Rice | mitochondrion | 33.89 | 47.93 |
| KXG39229 | Sorghum | cytosol, mitochondrion, nucleus | 34.31 | 47.67 |
| PGSC0003DMT400079179 | Potato | nucleus | 36.82 | 47.57 |
| GSMUA_Achr8P17630_001 | Banana | nucleus | 34.73 | 47.43 |
| KXG36718 | Sorghum | nucleus | 33.89 | 47.37 |
| Solyc04g074550.2.1 | Tomato | nucleus, plastid | 36.4 | 47.03 |
| CDY00453 | Canola | cytosol, nucleus, plastid | 35.98 | 46.49 |
| GSMUA_Achr7P11740_001 | Banana | cytosol, mitochondrion, nucleus | 32.64 | 46.43 |
| AT1G22450.1 | Thale cress | cytosol, nucleus, plastid | 36.82 | 46.07 |
| Solyc12g057120.1.1 | Tomato | plastid | 34.31 | 46.07 |
| PGSC0003DMT400045783 | Potato | extracellular, mitochondrion | 36.4 | 46.03 |
| CDY46649 | Canola | cytosol, nucleus, plastid | 35.15 | 45.41 |
| Zm00001d047218_P002 | Maize | nucleus | 31.8 | 25.68 |
Protein Annotations
| Gene3D:1.10.10.140 | EntrezGene:100263948 | wikigene:100263948 | MapMan:2.4.5.1.7 | ProteinID:CCB49750 | ProteinID:CCB49750.1 |
| InterPro:Cyt_c_oxidase_su6B | InterPro:Cyt_c_oxidase_su6B_sf | UniProt:F6HC12 | EMBL:FN595514 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | InterPro:IPR036549 | EntrezGene:LOC100263948 | wikigene:LOC100263948 |
| PFAM:PD015172 | PFAM:PF02297 | PFscan:PS51808 | PANTHER:PTHR11387 | PANTHER:PTHR11387:SF30 | SUPFAM:SSF47694 |
| TIGR:TC51789 | UniParc:UPI0002109DFB | ArrayExpress:VIT_13s0067g03810 | EnsemblPlantsGene:VIT_13s0067g03810 | EnsemblPlants:VIT_13s0067g03810.t01 | RefSeq:XP_002281992 |
| RefSeq:XP_002281992.1 | RefSeq:XP_002282033 | RefSeq:XP_002282033.1 | RefSeq:XP_002282064 | RefSeq:XP_002282064.1 | SEG:seg |
Description
No Description!
Coordinates
chr13:+:2138205..2152137
Molecular Weight (calculated)
26477.3 Da
IEP (calculated)
4.234
GRAVY (calculated)
-0.679
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQDEGNCYL NDSKQERQSE RAPLWSRPLE CATTEILPFL LLLKNLTSMA SADVGQNVSL HEHYMLGDGK GIESVEKSEV KILVDSASEN VVTEKTEETP
101: AVTKEATEAA PTAAEEIIEV TSAASHEATP AAKDISEATP DAAEESSNNV EEENSGDLEV EHTSEIKLET APADFRFPST NQTRHCFTRY IEYHRCTAAK
201: GEGATECDKF AKFYRSLCPA EWVERWNEQR ENGTFPGPL
101: AVTKEATEAA PTAAEEIIEV TSAASHEATP AAKDISEATP DAAEESSNNV EEENSGDLEV EHTSEIKLET APADFRFPST NQTRHCFTRY IEYHRCTAAK
201: GEGATECDKF AKFYRSLCPA EWVERWNEQR ENGTFPGPL
001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
Arabidopsis Description
COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.