Factsheet for Zm00001d047218_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014297_P006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22450.1	Zm00001d014297_P006	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0390400-01	Rice	mitochondrion	37.84	66.27
KXG39229	Sorghum	cytosol, mitochondrion, nucleus	37.5	64.53
Zm00001d029393_P001	Maize	plastid	37.16	63.95
CDX91679	Canola	cytosol, nucleus, plastid	23.99	62.28
CDY41480	Canola	cytosol, mitochondrion, nucleus	23.99	60.17
GSMUA_Achr8P17630_001	Banana	nucleus	29.05	49.14
GSMUA_Achr7P11740_001	Banana	cytosol, mitochondrion, nucleus	27.7	48.81
Bra031391.1-P	Field mustard	cytosol, nucleus, plastid	26.69	48.77
CDY71646	Canola	cytosol, nucleus, plastid	26.69	48.77
CDY04815	Canola	nucleus	26.69	48.47
Solyc12g057120.1.1	Tomato	plastid	28.04	46.63
PGSC0003DMT400079179	Potato	nucleus	28.72	45.95
KRH16776	Soybean	endoplasmic reticulum, mitochondrion	27.03	45.71
KRH72388	Soybean	endoplasmic reticulum	26.69	45.4
Solyc04g074550.2.1	Tomato	nucleus, plastid	28.04	44.86
CDY46649	Canola	cytosol, nucleus, plastid	27.36	43.78
PGSC0003DMT400045783	Potato	extracellular, mitochondrion	27.7	43.39
CDY00453	Canola	cytosol, nucleus, plastid	26.69	42.7
AT1G22450.1	Thale cress	cytosol, nucleus, plastid	27.03	41.88
Zm00001d051055_P003	Maize	mitochondrion	18.24	36.0
VIT_13s0067g03810.t01	Wine grape	cytosol, mitochondrion, nucleus	25.68	31.8
VIT_13s0067g03800.t01	Wine grape	mitochondrion	25.34	31.25

Protein Annotations

Gene3D:1.10.10.140	EntrezGene:100272443	MapMan:2.4.5.1.7	UniProt:A0A1D6P7V7	ProteinID:AQL05912.1	ncoils:Coil
InterPro:Cyt_c_oxidase_su6B	InterPro:Cyt_c_oxidase_su6B_sf	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	InterPro:IPR036549	PFAM:PD015172	PFAM:PF02297	PFscan:PS51808	PANTHER:PTHR11387
PANTHER:PTHR11387:SF30	SUPFAM:SSF47694	UniParc:UPI000842548D	EnsemblPlantsGene:Zm00001d047218	EnsemblPlants:Zm00001d047218_P002	EnsemblPlants:Zm00001d047218_T002
SEG:seg	:	:	:	:	:

Description

Cytochrome c oxidase subunit 6b-1

Coordinates

chr9:-:122654458..122676773

Molecular Weight (calculated)

33308.3 Da

IEP (calculated)

4.378

GRAVY (calculated)

-0.848

Length

296 amino acids

Sequence
(BLAST)

001: MAAEAKTPSL AEEYSLPPQE VPVEKAAEEK PSSGTETESA PSTNDETPSS VEDKNETSEV QDAAEKSDAE ETNTAAEEAS ETAEEEEAEK PEIKIETAPA
101: DFRFPTTNQT RHCFTRYVEY HRCVAAKGED APECDKFAKY YRSLCPGEWE CSERIVANKD MMLDVFDYVV VDFVPNSYQE PTLRLPSISP GSNGKKRTFM
201: CLDEKDDSAI QHRSKKSCCS ESVDHHLSRL LDQRVVVQEI LTGPISINHC TEKLKKCGFS KQQLWDANDI LKADLELRQV ERWNEQRENG TFPGPL

Best Arabidopsis Sequence Match ( AT1G22450.1 )
(BLAST)

001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P

Arabidopsis Description

COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.