Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P22740_001 | |
| GSMUA_Achr4P17470_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22450.1 | GSMUA_Achr1P22740_001 | AT5G35750.1 | 18642946 |
| AT1G22450.1 | GSMUA_Achr4P17470_001 | AT5G35750.1 | 18642946 |
| AT1G22450.1 | GSMUA_AchrUn_... | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P04880_001 | Banana | cytosol | 36.0 | 81.82 |
| CDX91679 | Canola | cytosol, nucleus, plastid | 43.43 | 66.67 |
| CDY41480 | Canola | cytosol, mitochondrion, nucleus | 44.0 | 65.25 |
| Os03t0390400-01 | Rice | mitochondrion | 55.43 | 57.4 |
| TraesCS2A01G164000.1 | Wheat | mitochondrion | 50.86 | 56.69 |
| TraesCS2D01G171000.1 | Wheat | golgi | 52.0 | 56.17 |
| TraesCS2B01G189900.1 | Wheat | golgi | 52.0 | 56.17 |
| HORVU2Hr1G029990.1 | Barley | plasma membrane | 53.14 | 55.69 |
| CDY04815 | Canola | nucleus | 50.29 | 53.99 |
| GSMUA_Achr7P11740_001 | Banana | cytosol, mitochondrion, nucleus | 51.43 | 53.57 |
| KXG39229 | Sorghum | cytosol, mitochondrion, nucleus | 52.57 | 53.49 |
| KXG36718 | Sorghum | nucleus | 51.43 | 52.63 |
| KRH16776 | Soybean | endoplasmic reticulum, mitochondrion | 52.57 | 52.57 |
| Zm00001d029393_P001 | Maize | plastid | 51.43 | 52.33 |
| Bra031391.1-P | Field mustard | cytosol, nucleus, plastid | 48.0 | 51.85 |
| CDY71646 | Canola | cytosol, nucleus, plastid | 48.0 | 51.85 |
| KRH72388 | Soybean | endoplasmic reticulum | 51.43 | 51.72 |
| Solyc12g057120.1.1 | Tomato | plastid | 47.43 | 46.63 |
| PGSC0003DMT400079179 | Potato | nucleus | 48.57 | 45.95 |
| PGSC0003DMT400045783 | Potato | extracellular, mitochondrion | 49.14 | 45.5 |
| CDY46649 | Canola | cytosol, nucleus, plastid | 48.0 | 45.41 |
| CDY00453 | Canola | cytosol, nucleus, plastid | 48.0 | 45.41 |
| Solyc04g074550.2.1 | Tomato | nucleus, plastid | 47.43 | 44.86 |
| AT1G22450.1 | Thale cress | cytosol, nucleus, plastid | 48.57 | 44.5 |
| VIT_13s0067g03810.t01 | Wine grape | cytosol, mitochondrion, nucleus | 47.43 | 34.73 |
| VIT_13s0067g03800.t01 | Wine grape | mitochondrion | 46.86 | 34.17 |
| Zm00001d047218_P002 | Maize | nucleus | 49.14 | 29.05 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P17630_001 | EnsemblPlants:GSMUA_Achr8T17630_001 | EnsemblPlantsGene:GSMUA_Achr8G17630_001 | Gene3D:1.10.10.140 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | InterPro:Cyt_c_oxidase_su6B | InterPro:Cyt_c_oxidase_su6B_sf | InterPro:IPR036549 |
| PANTHER:PTHR11387 | PANTHER:PTHR11387:SF30 | PFAM:PD015172 | PFAM:PF02297 | PFscan:PS51808 | SEG:seg |
| SUPFAM:SSF47694 | UniParc:UPI000296083D | UniProt:M0TRB6 | MapMan:2.4.5.1.7 | : | : |
Description
Cytochrome c oxidase subunit 6B [Source:GMGC_GENE;Acc:GSMUA_Achr8G17630_001]
Coordinates
chr8:+:18033932..18039248
Molecular Weight (calculated)
19661.0 Da
IEP (calculated)
3.985
GRAVY (calculated)
-1.090
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESATEEPP SLAEQWSLQD IEKTDQTEAS VKQTNGDENP ADVSSEEVTA EKNGESFASD AVTEKSDQTP SAEETSAVEE MNGEAPEEQE TEVPQVEEKP
101: EIKIETAPAD FRFPTTNQTR HCFTRYIEYH RCIAAKGEDA SECNKFAKYY RSLCPGEWVE RWNEQRENGT FPGPL
101: EIKIETAPAD FRFPTTNQTR HCFTRYIEYH RCIAAKGEDA SECNKFAKYY RSLCPGEWVE RWNEQRENGT FPGPL
001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
Arabidopsis Description
COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.