Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22450.1 | CDX74635 | AT5G35750.1 | 18642946 |
| AT1G22450.1 | CDY47297 | AT5G35750.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031391.1-P | Field mustard | cytosol, nucleus, plastid | 100.0 | 100.0 |
| CDY04815 | Canola | nucleus | 89.51 | 88.96 |
| CDX91679 | Canola | cytosol, nucleus, plastid | 57.41 | 81.58 |
| CDY41480 | Canola | cytosol, mitochondrion, nucleus | 57.41 | 78.81 |
| CDY29877 | Canola | cytosol | 36.42 | 75.64 |
| CDX89207 | Canola | cytosol | 35.8 | 74.36 |
| CDY00453 | Canola | cytosol, nucleus, plastid | 71.6 | 62.7 |
| CDY46649 | Canola | cytosol, nucleus, plastid | 70.99 | 62.16 |
| CDY19008 | Canola | extracellular | 35.8 | 59.18 |
| AT1G22450.1 | Thale cress | cytosol, nucleus, plastid | 69.14 | 58.64 |
| TraesCS2A01G164000.1 | Wheat | mitochondrion | 52.47 | 54.14 |
| KXG39229 | Sorghum | cytosol, mitochondrion, nucleus | 57.41 | 54.07 |
| Zm00001d029393_P001 | Maize | plastid | 56.79 | 53.49 |
| TraesCS2D01G171000.1 | Wheat | golgi | 53.09 | 53.09 |
| TraesCS2B01G189900.1 | Wheat | golgi | 53.09 | 53.09 |
| Os03t0390400-01 | Rice | mitochondrion | 54.32 | 52.07 |
| KRH16776 | Soybean | endoplasmic reticulum, mitochondrion | 56.17 | 52.0 |
| HORVU2Hr1G029990.1 | Barley | plasma membrane | 52.47 | 50.9 |
| Solyc12g057120.1.1 | Tomato | plastid | 55.56 | 50.56 |
| KRH72388 | Soybean | endoplasmic reticulum | 53.7 | 50.0 |
| GSMUA_Achr7P11740_001 | Banana | cytosol, mitochondrion, nucleus | 51.23 | 49.4 |
| KXG36718 | Sorghum | nucleus | 51.85 | 49.12 |
| PGSC0003DMT400045783 | Potato | extracellular, mitochondrion | 56.17 | 48.15 |
| GSMUA_Achr8P17630_001 | Banana | nucleus | 51.85 | 48.0 |
| PGSC0003DMT400079179 | Potato | nucleus | 54.32 | 47.57 |
| Solyc04g074550.2.1 | Tomato | nucleus, plastid | 53.7 | 47.03 |
| CDX92861 | Canola | cytosol, extracellular, mitochondrion, plastid | 40.74 | 37.71 |
| VIT_13s0067g03810.t01 | Wine grape | cytosol, mitochondrion, nucleus | 53.7 | 36.4 |
| VIT_13s0067g03800.t01 | Wine grape | mitochondrion | 51.85 | 35.0 |
| Zm00001d047218_P002 | Maize | nucleus | 48.77 | 26.69 |
| CDY44662 | Canola | cytosol, mitochondrion, nucleus | 20.99 | 26.56 |
Protein Annotations
| Gene3D:1.10.10.140 | MapMan:2.4.5.1.7 | GO:A0A078K1L0 | UniProt:A0A078K1L0 | EnsemblPlants:CDY71646 | ProteinID:CDY71646 |
| ProteinID:CDY71646.1 | InterPro:Cyt_c_oxidase_su6B | InterPro:Cyt_c_oxidase_su6B_sf | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | EnsemblPlantsGene:GSBRNA2T00017784001 | InterPro:IPR036549 | PFAM:PD015172 | PFAM:PF02297 |
| PFscan:PS51808 | PANTHER:PTHR11387 | PANTHER:PTHR11387:SF30 | SUPFAM:SSF47694 | UniParc:UPI0002547514 | SEG:seg |
Description
BnaAnng38290DBnaAnng38290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K1L0]
Coordinates
chrLK046771:+:1016..2481
Molecular Weight (calculated)
18320.5 Da
IEP (calculated)
3.985
GRAVY (calculated)
-1.085
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESVSSQTP SLSEQYHLEK EVKPVEVAPE VTTTQAEEVE TKEDSPSEEA VEDKSESPEV PSEEAPAAAE ENNEENTTEE VAEETPDEIK LETAPADFRF
101: PTTNQTRHCF TRYIEYHRCV SAKGDDAPEC DKFSKFYRSL CPGEWVDRWN EQRENGTFPG PL
101: PTTNQTRHCF TRYIEYHRCV SAKGDDAPEC DKFSKFYRSL CPGEWVDRWN EQRENGTFPG PL
001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P
Arabidopsis Description
COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [cytosol,nucleus,plastid]
SUBAcon: [cytosol,nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.