Factsheet for TraesCS2A01G164000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

golgi: 25769308
mitochondrion: 26136264

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26136264 doi

S Wang, G Zhang, Y Zhang, Q Song, Z Chen, J Wang, J Guo, N Niu, J Wang, S Ma

College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China zhanggaisheng18@sohu.com., College of Agronomy, Northwest A&F University, National Yangling Agricultural Biotechnology & Breeding Center, Yangling Branch of State Wheat Improvement Centre, Wheat Breeding Engineering Research Center, Ministry of Education, Key Laboratory of Crop Heterosis of Shaanxi Province, Yangling, Shaanxi 712100, P. R. China., Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G171000.1	Wheat	golgi	89.81	87.04
TraesCS2B01G189900.1	Wheat	golgi	88.53	85.8
HORVU2Hr1G029990.1	Barley	plasma membrane	87.9	82.63
CDX91679	Canola	cytosol, nucleus, plastid	48.41	66.67
CDY41480	Canola	cytosol, mitochondrion, nucleus	49.04	65.25
KXG36718	Sorghum	nucleus	69.43	63.74
CDY04815	Canola	nucleus	55.41	53.37
Bra031391.1-P	Field mustard	cytosol, nucleus, plastid	54.14	52.47
CDY71646	Canola	cytosol, nucleus, plastid	54.14	52.47
GSMUA_Achr7P11740_001	Banana	cytosol, mitochondrion, nucleus	56.05	52.38
GSMUA_Achr8P17630_001	Banana	nucleus	56.69	50.86
AT1G22450.1	Thale cress	cytosol, nucleus, plastid	59.87	49.21
KRH16776	Soybean	endoplasmic reticulum, mitochondrion	54.14	48.57
Solyc12g057120.1.1	Tomato	plastid	54.78	48.31
KRH72388	Soybean	endoplasmic reticulum	53.5	48.28
CDY00453	Canola	cytosol, nucleus, plastid	56.05	47.57
CDY46649	Canola	cytosol, nucleus, plastid	55.41	47.03
PGSC0003DMT400079179	Potato	nucleus	53.5	45.41
PGSC0003DMT400045783	Potato	extracellular, mitochondrion	54.14	44.97
Solyc04g074550.2.1	Tomato	nucleus, plastid	52.87	44.86
VIT_13s0067g03810.t01	Wine grape	cytosol, mitochondrion, nucleus	52.23	34.31
VIT_13s0067g03800.t01	Wine grape	mitochondrion	51.59	33.75

Protein Annotations

Gene3D:1.10.10.140	MapMan:2.4.5.1.7	InterPro:Cyt_c_oxidase_su6B	InterPro:Cyt_c_oxidase_su6B_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006950	GO:GO:0008150	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009628	GO:GO:0009651	GO:GO:0016020	InterPro:IPR036549	PFAM:PD015172	PFAM:PF02297
PFscan:PS51808	PANTHER:PTHR11387	PANTHER:PTHR11387:SF30	SUPFAM:SSF47694	EnsemblPlantsGene:TraesCS2A01G164000	EnsemblPlants:TraesCS2A01G164000.1
TIGR:cd00926	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:116157202..116159869

Molecular Weight (calculated)

17561.0 Da

IEP (calculated)

4.080

GRAVY (calculated)

-0.939

Length

157 amino acids

Sequence
(BLAST)

001: MAAEGKVPTL AEEYSLPPKE VPVEKPAEEK SATITEASPA DEPAADVEEK SETPEVKEPE AEETVPAAEE SDAAPEETEE KPEIVIETAP ADFRFPTTNQ
101: TRHCFTRYVE YHRCVAAKGD DAPECEKFAK YYRSLCPSEW VERWNEQREN GTFPGPL

Best Arabidopsis Sequence Match ( AT1G22450.1 )
(BLAST)

001: MADAVNAQTP SLSEQYHLEK EVKQDTSAKP VEVKEVAPEV TTQAEEVKTE QAKEESPVEE AVSVVEEKSE SAPESTEVAS EAPAAAEDNA EETPAAAEEN
101: NDENASEEVA EETPDEIKLE TAPADFRFPT TNQTRHCFTR YVEYHRCVAA KGDDAPECDK FAKFYRSLCP SEWVDRWNEQ RENGTFPGPL P

Arabidopsis Description

COX6B-1COX6B [Source:UniProtKB/TrEMBL;Acc:A0A178WPQ4]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.