Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89207 | Canola | cytosol | 73.47 | 92.31 |
| CDY29877 | Canola | cytosol | 73.47 | 92.31 |
| AT5G57815.1 | Thale cress | cytosol | 73.47 | 92.31 |
| Solyc07g006270.2.1 | Tomato | cytosol | 65.31 | 83.12 |
| KRH18933 | Soybean | cytosol | 65.31 | 83.12 |
| Os04t0498200-01 | Rice | cytosol | 62.24 | 79.22 |
| OQU85293 | Sorghum | cytosol | 62.24 | 79.22 |
| GSMUA_Achr3P04880_001 | Banana | cytosol | 60.2 | 76.62 |
| VIT_11s0037g01120.t01 | Wine grape | cytosol | 60.2 | 76.62 |
| KRH02965 | Soybean | cytosol | 65.31 | 73.56 |
| PGSC0003DMT400029025 | Potato | mitochondrion | 66.33 | 69.15 |
| HORVU7Hr1G032110.2 | Barley | cytosol | 45.92 | 62.5 |
| HORVU5Hr1G020140.1 | Barley | cytosol | 44.9 | 60.27 |
| HORVU2Hr1G085960.3 | Barley | cytosol | 46.94 | 54.12 |
| CDX91679 | Canola | cytosol, nucleus, plastid | 59.18 | 50.88 |
| CDY41480 | Canola | cytosol, mitochondrion, nucleus | 59.18 | 49.15 |
| CDX92861 | Canola | cytosol, extracellular, mitochondrion, plastid | 76.53 | 42.86 |
| CDY71646 | Canola | cytosol, nucleus, plastid | 59.18 | 35.8 |
| CDY04815 | Canola | nucleus | 58.16 | 34.97 |
| CDY46649 | Canola | cytosol, nucleus, plastid | 59.18 | 31.35 |
| CDY00453 | Canola | cytosol, nucleus, plastid | 59.18 | 31.35 |
| Zm00001d051055_P003 | Maize | mitochondrion | 47.96 | 31.33 |
| CDY44662 | Canola | cytosol, mitochondrion, nucleus | 32.65 | 25.0 |
Protein Annotations
| Gene3D:1.10.10.140 | MapMan:2.4.5.1.7 | GO:A0A078G2Y4 | UniProt:A0A078G2Y4 | EnsemblPlants:CDY19008 | ProteinID:CDY19008 |
| ProteinID:CDY19008.1 | InterPro:Cyt_c_oxidase_su6B | InterPro:Cyt_c_oxidase_su6B_sf | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | EnsemblPlantsGene:GSBRNA2T00006252001 | InterPro:IPR036549 | PFAM:PD015172 | PFAM:PF02297 |
| PIRSF:PIRSF000278 | PFscan:PS51808 | PANTHER:PTHR11387 | PANTHER:PTHR11387:SF30 | SUPFAM:SSF47694 | UniParc:UPI0004EDC1AA |
Description
BnaC01g20600DBnaC01g20600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2Y4]
Coordinates
chrLK032091:+:280724..282409
Molecular Weight (calculated)
11570.7 Da
IEP (calculated)
7.207
GRAVY (calculated)
-0.461
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MIFFTGKCIS ESYSFFLCVF LLNQIELKTA PADFRFPTTN QTRHCFTRYI EFHRCTTAKG EDSNDCERFA KYYRALCPGE WVDKWNEQRE TGTFPGPL
1: MEDEIELKTA PADFRFPTTN QTRHCFTRYI EFHRCTTAKG EESNDCERFA KYYRALCPGE WVDKWNEQRE SGTFPGPL
Arabidopsis Description
COX6B-2Cytochrome c oxidase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UHL9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.