Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09461 | Canola | cytosol | 97.95 | 97.95 |
| CDY66307 | Canola | cytosol | 97.95 | 97.95 |
| AT1G23290.1 | Thale cress | cytosol | 97.26 | 97.26 |
| CDY61221 | Canola | cytosol | 97.26 | 97.26 |
| Bra007929.1-P | Field mustard | cytosol | 95.89 | 95.89 |
| AT1G12960.1 | Thale cress | nucleus | 55.48 | 77.88 |
Protein Annotations
| MapMan:17.1.2.1.28 | Gene3D:3.100.10.10 | EntrezGene:843397 | UniProt:A0A178WDG8 | ProteinID:AAG52338.1 | ProteinID:AAG52464.1 |
| ProteinID:AEE35087.1 | ArrayExpress:AT1G70600 | EnsemblPlantsGene:AT1G70600 | RefSeq:AT1G70600 | TAIR:AT1G70600 | RefSeq:AT1G70600-TAIR-G |
| EnsemblPlants:AT1G70600.1 | TAIR:AT1G70600.1 | EMBL:AY039519 | EMBL:AY048228 | EMBL:AY085573 | EMBL:AY091706 |
| GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 |
| GO:GO:0009987 | GO:GO:0015934 | GO:GO:0016020 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0022626 |
| GO:GO:0030529 | GO:GO:0042788 | InterPro:L18e/L15P_sf | HAMAP:MF_01341 | RefSeq:NP_177217.1 | ProteinID:OAP16164.1 |
| UniProt:P49637 | PFAM:PF00828 | PO:PO:0000293 | PO:PO:0009025 | ScanProsite:PS00475 | PANTHER:PTHR11721 |
| PANTHER:PTHR11721:SF10 | UniProt:Q7G923 | InterPro:Ribosomal_L15 | InterPro:Ribosomal_L15_CS | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 |
| UniParc:UPI0000000992 | EMBL:X91959 | EMBL:Z17767 | : | : | : |
Description
RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
Coordinates
chr1:-:26620821..26621779
Molecular Weight (calculated)
16456.4 Da
IEP (calculated)
11.316
GRAVY (calculated)
-0.605
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.