Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09461 | Canola | cytosol | 99.32 | 99.32 |
| CDY66307 | Canola | cytosol | 99.32 | 99.32 |
| CDY23497 | Canola | cytosol, mitochondrion | 42.47 | 98.41 |
| CDY23493 | Canola | cytosol | 78.77 | 98.29 |
| CDX68339 | Canola | mitochondrion | 67.81 | 98.02 |
| AT1G70600.1 | Thale cress | cytosol | 97.26 | 97.26 |
| Bra007929.1-P | Field mustard | cytosol | 97.26 | 97.26 |
| CDX91707 | Canola | cytosol | 78.08 | 95.0 |
| CDY04732 | Canola | cytosol | 75.34 | 94.02 |
| CDY21430 | Canola | extracellular | 75.34 | 94.02 |
| CDY41455 | Canola | cytosol | 75.34 | 93.22 |
| CDY12475 | Canola | extracellular | 74.66 | 93.16 |
| CDY25779 | Canola | extracellular | 65.07 | 93.14 |
| CDY23496 | Canola | cytosol | 73.97 | 90.0 |
| CDX80514 | Canola | plastid | 65.07 | 41.13 |
Protein Annotations
| MapMan:17.1.2.1.28 | Gene3D:3.100.10.10 | GO:A0A078J4Q5 | UniProt:A0A078J4Q5 | EnsemblPlants:CDY61221 | ProteinID:CDY61221 |
| ProteinID:CDY61221.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00030726001 |
| InterPro:L18e/L15P_sf | HAMAP:MF_01341 | PFAM:PF00828 | ScanProsite:PS00475 | PANTHER:PTHR11721 | PANTHER:PTHR11721:SF10 |
| InterPro:Ribosomal_L15 | InterPro:Ribosomal_L15_CS | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | UniParc:UPI0004EC1197 | : |
Description
BnaC06g43680DBnaC06g43680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4Q5]
Coordinates
chrLK033970:+:15197..15850
Molecular Weight (calculated)
16468.4 Da
IEP (calculated)
11.403
GRAVY (calculated)
-0.597
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRFKKNRK KRGHVSAGHG RVGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDRLWS LVPEDVKAKA TKDKVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
Arabidopsis Description
RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.