CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41455	Canola	cytosol	97.44	96.61
CDY04732	Canola	cytosol	95.73	95.73
CDY21430	Canola	extracellular	95.73	95.73
CDY23493	Canola	cytosol	93.16	93.16
CDX91707	Canola	cytosol	79.49	77.5
AT1G23290.1	Thale cress	cytosol	94.87	76.03
CDY09461	Canola	cytosol	94.02	75.34
CDY66307	Canola	cytosol	94.02	75.34
CDY61221	Canola	cytosol	93.16	74.66
CDY25779	Canola	extracellular	62.39	71.57
Bra012370.1-P	Field mustard	cytosol, mitochondrion	94.87	71.15
CDX68339	Canola	mitochondrion	58.97	68.32
CDY23496	Canola	cytosol	64.96	63.33
CDY23497	Canola	cytosol, mitochondrion	32.48	60.32
CDX80514	Canola	plastid	58.97	29.87

Protein Annotations

MapMan:17.1.2.1.28	Gene3D:3.100.10.10	GO:A0A078FDL8	UniProt:A0A078FDL8	EnsemblPlants:CDY12475	ProteinID:CDY12475
ProteinID:CDY12475.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00061780001
InterPro:L18e/L15P_sf	HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR11721	PANTHER:PTHR11721:SF10
InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI0004EF1EE2	SEG:seg

Description

BnaC07g13150DBnaC07g13150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDL8]

Coordinates

chrLK032023:-:47819..48491

Molecular Weight (calculated)

12789.8 Da

IEP (calculated)

11.471

GRAVY (calculated)

-0.699

Length

117 amino acids

Sequence
(BLAST)

001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKDVKAK AGKDKVPMID VTQHGFFKVL GKGHLPENRP FVVKAKLISK
101: TAEKKIKEAG GSVVLTA

Best Arabidopsis Sequence Match ( AT1G23290.1 )
(BLAST)

001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS SKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AB60S ribosomal protein L27a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.