Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23497 | Canola | cytosol, mitochondrion | 51.67 | 98.41 |
| CDY25779 | Canola | extracellular | 82.5 | 97.06 |
| CDX68339 | Canola | mitochondrion | 80.0 | 95.05 |
| CDY12475 | Canola | extracellular | 77.5 | 79.49 |
| CDY09461 | Canola | cytosol | 95.83 | 78.77 |
| CDY66307 | Canola | cytosol | 95.83 | 78.77 |
| CDY04732 | Canola | cytosol | 76.67 | 78.63 |
| CDY21430 | Canola | extracellular | 76.67 | 78.63 |
| CDY61221 | Canola | cytosol | 95.0 | 78.08 |
| CDY41455 | Canola | cytosol | 76.67 | 77.97 |
| CDY23493 | Canola | cytosol | 75.0 | 76.92 |
| CDY23496 | Canola | cytosol | 69.17 | 69.17 |
| CDX80514 | Canola | plastid | 60.83 | 31.6 |
Protein Annotations
| MapMan:17.1.2.1.28 | Gene3D:3.100.10.10 | GO:A0A078DS23 | EnsemblPlants:CDX91707 | ProteinID:CDX91707 | ProteinID:CDX91707.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00153195001 | InterPro:L18e/L15P_sf | HAMAP:MF_01341 |
| PFAM:PF00828 | PANTHER:PTHR11721 | PANTHER:PTHR11721:SF10 | InterPro:Ribosomal_L15 | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 |
| UniParc:UPI0004EF0345 | : | : | : | : | : |
Description
BnaC08g06260D
Coordinates
chrLK031869:+:316380..317054
Molecular Weight (calculated)
13483.8 Da
IEP (calculated)
11.647
GRAVY (calculated)
-0.590
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFYC PIVNLDRLWS LVLGKGHLPE NRPFVVKAKL
101: ISKTAEKKIK EAGGAVVLTA
101: ISKTAEKKIK EAGGAVVLTA
001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS SKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
Arabidopsis Description
RPL27AB60S ribosomal protein L27a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR33]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.