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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, cytosol

Predictor Summary:
  • plastid 1
  • mitochondrion 4
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX68339 Canola mitochondrion 98.41 61.39
CDY25779 Canola extracellular 96.83 59.8
CDX91707 Canola cytosol 98.41 51.67
GSMUA_Achr8P30580_001 Banana cytosol 80.95 51.52
AT1G12960.1 Thale cress nucleus 84.13 50.96
GSMUA_Achr9P29110_001 Banana cytosol 80.95 45.95
CDY09461 Canola cytosol 98.41 42.47
CDY61221 Canola cytosol 98.41 42.47
CDY66307 Canola cytosol 98.41 42.47
GSMUA_Achr1P21900_001 Banana cytosol 79.37 41.67
Solyc03g112360.1.1 Tomato cytosol, nucleus, unclear 85.71 36.49
PGSC0003DMT400046820 Potato cytosol 85.71 36.49
KRH74528 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 85.71 36.49
KRH69632 Soybean cytosol 85.71 36.49
Zm00001d022124_P001 Maize plasma membrane, plastid 82.54 35.86
EER99694 Sorghum cytosol 82.54 35.86
EES06343 Sorghum cytosol 82.54 35.62
PGSC0003DMT400069410 Potato cytosol 82.54 35.14
Solyc06g071720.1.1 Tomato nucleus 82.54 35.14
Os07t0613200-00 Rice nucleus 80.95 34.93
CDY23493 Canola cytosol 63.49 34.19
TraesCS2D01G178300.1 Wheat cytosol, golgi, unclear 77.78 33.79
TraesCS2A01G170800.1 Wheat cytosol, nucleus 77.78 33.79
Zm00001d015375_P001 Maize cytosol, mitochondrion, plastid 77.78 33.56
CDY21430 Canola extracellular 61.9 33.33
CDY04732 Canola cytosol 61.9 33.33
TraesCS2B01G197200.1 Wheat cytosol, golgi, unclear 76.19 33.1
CDY41455 Canola cytosol 61.9 33.05
Os03t0408300-00 Rice nucleus 76.19 32.88
Os02t0175600-01 Rice nucleus 74.6 32.64
CDY12475 Canola extracellular 60.32 32.48
CDY23496 Canola cytosol 55.56 29.17
CDX80514 Canola plastid 96.83 26.41
GSMUA_Achr6P06280_001 Banana nucleus 73.02 21.7
VIT_00s1889g00010.t01 Wine grape plastid 0.0 0.0
Protein Annotations
EnsemblPlants:CDY23497EnsemblPlantsGene:GSBRNA2T00022131001Gene3D:3.100.10.10GO:A0A078GEF4InterPro:L18e/L15P_sfInterPro:Ribosomal_L18e/L15P
PANTHER:PTHR11721PANTHER:PTHR11721:SF10PFAM:PF00828ProteinID:CDY23497ProteinID:CDY23497.1SUPFAM:SSF52080
UniParc:UPI0004EF1AAEUniProt:A0A078GEF4MapMan:17.1.2.1.28:::
Description
BnaC06g24660DBnaC06g24660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEF4]
Coordinates
chrLK032144:+:195365..195634
Molecular Weight (calculated)
7167.0 Da
IEP (calculated)
10.844
GRAVY (calculated)
-0.086
Length
63 amino acids
Sequence
(BLAST)
1: MRYFHKLRNK FYCPIVNLDR LWSLVLGKGH LPENKPFVVK AKLISKTAEK KIKEAGGAVV LTA
Best Arabidopsis Sequence Match ( AT1G23290.1 )
(BLAST)
001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS SKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
Arabidopsis Description
RPL27AB60S ribosomal protein L27a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR33]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.