Factsheet for Zm00001d015375_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06343	Sorghum	cytosol	93.84	93.84
Os07t0613200-00	Rice	nucleus	91.1	91.1
GSMUA_Achr1P21900_001	Banana	cytosol	73.97	90.0
GSMUA_Achr8P30580_001	Banana	cytosol	60.27	88.89
Zm00001d022124_P001	Maize	plasma membrane, plastid	87.67	88.28
VIT_14s0066g00560.t01	Wine grape	cytosol	81.51	81.51
GSMUA_Achr9P29110_001	Banana	cytosol	61.64	81.08
VIT_00s0225g00020.t01	Wine grape	cytosol	80.14	80.14
Bra003951.1-P	Field mustard	cytosol	79.45	79.45
VIT_17s0000g09110.t01	Wine grape	cytosol	79.45	79.45
KRH69632	Soybean	cytosol	80.14	79.05
Bra024577.1-P	Field mustard	cytosol	63.01	78.63
KRH74528	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	79.45	78.38
Solyc06g071720.1.1	Tomato	nucleus	79.45	78.38
Bra016354.1-P	Field mustard	cytosol	78.77	78.23
KRH57125	Soybean	cytosol	78.08	78.08
CDY23497	Canola	cytosol, mitochondrion	33.56	77.78
PGSC0003DMT400069410	Potato	cytosol	78.77	77.7
Solyc03g112360.1.1	Tomato	cytosol, nucleus, unclear	78.77	77.7
KRH54328	Soybean	cytosol	78.08	77.55
KRH63615	Soybean	endoplasmic reticulum, mitochondrion, nucleus	78.08	77.55
Bra007929.1-P	Field mustard	cytosol	77.4	77.4
KRH03232	Soybean	cytosol	77.4	77.4
PGSC0003DMT400046820	Potato	cytosol	78.08	77.03
Bra012370.1-P	Field mustard	cytosol, mitochondrion	76.03	71.15
AT1G12960.1	Thale cress	nucleus	49.32	69.23
GSMUA_Achr6P06280_001	Banana	nucleus	71.92	49.53
CDX80514	Canola	plastid	50.0	31.6
VIT_12s0034g00430.t01	Wine grape	cytosol, plastid	1.37	1.87
VIT_12s0034g00440.t01	Wine grape	plastid	1.37	1.79
VIT_00s1889g00010.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

EntrezGene:100274530	MapMan:17.1.2.1.28	Gene3D:3.100.10.10	ProteinID:AQK68738.1	UniProt:B4G1Q1	EMBL:BT043289
EMBL:EU976472	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	InterPro:L18e/L15P_sf
HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR11721	PANTHER:PTHR11721:SF11	InterPro:Ribosomal_L15
InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI00017B7877	EnsemblPlantsGene:Zm00001d015375	EnsemblPlants:Zm00001d015375_P001
EnsemblPlants:Zm00001d015375_T001	SEG:seg	:	:	:	:

Description

60S ribosomal protein L27a-3

Coordinates

chr5:-:87032284..87032724

Molecular Weight (calculated)

15985.8 Da

IEP (calculated)

11.647

GRAVY (calculated)

-0.408

Length

146 amino acids

Sequence
(BLAST)

001: MTTSLKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHRLRNKFHC PSVNVERLWS MVPAGKAAEA AGADQAPLVD
101: VTQFGYFKVL GKGMLPSRPI VVKAKLISKV AEKKIKAAGG AVLLTA

Best Arabidopsis Sequence Match ( AT1G23290.1 )
(BLAST)

001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS SKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AB60S ribosomal protein L27a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.