Factsheet for Solyc06g071720.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069410	Potato	cytosol	99.32	99.32
Solyc03g112360.1.1	Tomato	cytosol, nucleus, unclear	92.57	92.57
GSMUA_Achr1P21900_001	Banana	cytosol	71.62	88.33
KRH74528	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	87.16	87.16
KRH69632	Soybean	cytosol	85.14	85.14
GSMUA_Achr8P30580_001	Banana	cytosol	56.76	84.85
Bra003951.1-P	Field mustard	cytosol	83.11	84.25
Zm00001d022124_P001	Maize	plasma membrane, plastid	82.43	84.14
EER99694	Sorghum	cytosol	82.43	84.14
CDY23497	Canola	cytosol, mitochondrion	35.14	82.54
Bra016354.1-P	Field mustard	cytosol	81.08	81.63
Bra007929.1-P	Field mustard	cytosol	80.41	81.51
Bra024577.1-P	Field mustard	cytosol	64.19	81.2
EES06343	Sorghum	cytosol	79.73	80.82
Os07t0613200-00	Rice	nucleus	79.73	80.82
Os02t0175600-01	Rice	nucleus	77.7	79.86
Os03t0408300-00	Rice	nucleus	78.38	79.45
Zm00001d015375_P001	Maize	cytosol, mitochondrion, plastid	78.38	79.45
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	77.7	79.31
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	77.03	78.62
GSMUA_Achr9P29110_001	Banana	cytosol	58.78	78.38
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	76.35	77.93
Bra012370.1-P	Field mustard	cytosol, mitochondrion	79.05	75.0
AT1G12960.1	Thale cress	nucleus	51.35	73.08
GSMUA_Achr6P06280_001	Banana	nucleus	68.92	48.11
CDX80514	Canola	plastid	51.35	32.9
VIT_00s1889g00010.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.28	Gene3D:3.100.10.10	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
UniProt:K4C8P4	InterPro:L18e/L15P_sf	HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR11721
PANTHER:PTHR11721:SF10	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	EnsemblPlantsGene:Solyc06g071720.1
EnsemblPlants:Solyc06g071720.1.1	UniParc:UPI00027672D0	:	:	:	:

Description

No Description!

Coordinates

chr6:-:44184265..44184711

Molecular Weight (calculated)

16441.3 Da

IEP (calculated)

11.282

GRAVY (calculated)

-0.568

Length

148 amino acids

Sequence
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFYC PTVNIDTLWS LLPQEVKDKA AANKGTAPLI
101: DVTQFGYFKV LGKGVLPTGQ PVVVKAKLVS KNAEKKIKEN GGAVVLTA

Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.