Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G178300.1 | Wheat | cytosol, golgi, unclear | 99.31 | 99.31 |
| TraesCS2B01G197200.1 | Wheat | cytosol, golgi, unclear | 97.93 | 97.93 |
| Zm00001d022124_P001 | Maize | plasma membrane, plastid | 89.66 | 89.66 |
| EER99694 | Sorghum | cytosol | 89.66 | 89.66 |
| Os03t0408300-00 | Rice | nucleus | 88.28 | 87.67 |
| Os02t0175600-01 | Rice | nucleus | 86.21 | 86.81 |
| GSMUA_Achr1P21900_001 | Banana | cytosol | 71.72 | 86.67 |
| GSMUA_Achr8P30580_001 | Banana | cytosol | 57.93 | 84.85 |
| VIT_14s0066g00560.t01 | Wine grape | cytosol | 80.69 | 80.14 |
| PGSC0003DMT400046820 | Potato | cytosol | 81.38 | 79.73 |
| KRH54328 | Soybean | cytosol | 80.69 | 79.59 |
| KRH63615 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 80.69 | 79.59 |
| VIT_17s0000g09110.t01 | Wine grape | cytosol | 80.0 | 79.45 |
| VIT_00s0225g00020.t01 | Wine grape | cytosol | 80.0 | 79.45 |
| Solyc03g112360.1.1 | Tomato | cytosol, nucleus, unclear | 80.69 | 79.05 |
| Bra003951.1-P | Field mustard | cytosol | 79.31 | 78.77 |
| KRH69632 | Soybean | cytosol | 80.0 | 78.38 |
| PGSC0003DMT400069410 | Potato | cytosol | 80.0 | 78.38 |
| KRH03232 | Soybean | cytosol | 78.62 | 78.08 |
| KRH57125 | Soybean | cytosol | 78.62 | 78.08 |
| CDY23497 | Canola | cytosol, mitochondrion | 33.79 | 77.78 |
| KRH74528 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 79.31 | 77.7 |
| Solyc06g071720.1.1 | Tomato | nucleus | 79.31 | 77.7 |
| Bra024577.1-P | Field mustard | cytosol | 62.07 | 76.92 |
| Bra016354.1-P | Field mustard | cytosol | 77.93 | 76.87 |
| Bra007929.1-P | Field mustard | cytosol | 76.55 | 76.03 |
| GSMUA_Achr9P29110_001 | Banana | cytosol | 56.55 | 73.87 |
| Bra012370.1-P | Field mustard | cytosol, mitochondrion | 75.86 | 70.51 |
| AT1G12960.1 | Thale cress | nucleus | 48.97 | 68.27 |
| GSMUA_Achr6P06280_001 | Banana | nucleus | 69.66 | 47.64 |
| CDX80514 | Canola | plastid | 46.21 | 29.0 |
| VIT_12s0034g00430.t01 | Wine grape | cytosol, plastid | 2.07 | 2.8 |
| VIT_12s0034g00440.t01 | Wine grape | plastid | 1.38 | 1.79 |
| VIT_00s1889g00010.t01 | Wine grape | plastid | 0.0 | 0.0 |
Protein Annotations
| MapMan:17.1.2.1.28 | Gene3D:3.100.10.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | InterPro:L18e/L15P_sf |
| HAMAP:MF_01341 | PFAM:PF00828 | ScanProsite:PS00475 | PANTHER:PTHR11721 | PANTHER:PTHR11721:SF11 | InterPro:Ribosomal_L15 |
| InterPro:Ribosomal_L15_CS | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | EnsemblPlantsGene:TraesCS2A01G170800 | EnsemblPlants:TraesCS2A01G170800.1 | SEG:seg |
Description
No Description!
Coordinates
chr2A:+:126472284..126472721
Molecular Weight (calculated)
16030.8 Da
IEP (calculated)
11.350
GRAVY (calculated)
-0.471
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRFKKNRK KRGHVSAGHG RVGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLSNRFYT PTVNVERLWS MVPSEKAAEA GGDKAPVVDV
101: SQFGYFKVLG KGMLPEKPIV VKAKLISKIA EKKIKAAGGA VVLVA
101: SQFGYFKVLG KGMLPEKPIV VKAKLISKIA EKKIKAAGGA VVLVA
001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
Arabidopsis Description
RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.