Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY04732 | Canola | cytosol | 99.15 | 99.15 |
| CDY21430 | Canola | extracellular | 99.15 | 99.15 |
| Bra016354.1-P | Field mustard | cytosol | 97.44 | 77.55 |
| AT1G23290.1 | Thale cress | cytosol | 95.73 | 76.71 |
| Bra003951.1-P | Field mustard | cytosol | 94.87 | 76.03 |
| CDY25779 | Canola | extracellular | 64.96 | 74.51 |
| Bra007929.1-P | Field mustard | cytosol | 92.31 | 73.97 |
| Bra012370.1-P | Field mustard | cytosol, mitochondrion | 94.87 | 71.15 |
| VIT_17s0000g09110.t01 | Wine grape | cytosol | 83.76 | 67.12 |
| GSMUA_Achr1P21900_001 | Banana | cytosol | 68.38 | 66.67 |
| VIT_14s0066g00560.t01 | Wine grape | cytosol | 82.91 | 66.44 |
| VIT_00s0225g00020.t01 | Wine grape | cytosol | 82.91 | 66.44 |
| KRH03232 | Soybean | cytosol | 82.05 | 65.75 |
| KRH69632 | Soybean | cytosol | 82.91 | 65.54 |
| KRH57125 | Soybean | cytosol | 81.2 | 65.07 |
| KRH74528 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 82.05 | 64.86 |
| Zm00001d022124_P001 | Maize | plasma membrane, plastid | 80.34 | 64.83 |
| EER99694 | Sorghum | cytosol | 80.34 | 64.83 |
| KRH63615 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 81.2 | 64.63 |
| KRH54328 | Soybean | cytosol | 81.2 | 64.63 |
| EES06343 | Sorghum | cytosol | 80.34 | 64.38 |
| PGSC0003DMT400046820 | Potato | cytosol | 81.2 | 64.19 |
| Solyc03g112360.1.1 | Tomato | cytosol, nucleus, unclear | 81.2 | 64.19 |
| Solyc06g071720.1.1 | Tomato | nucleus | 81.2 | 64.19 |
| Os07t0613200-00 | Rice | nucleus | 79.49 | 63.7 |
| GSMUA_Achr8P30580_001 | Banana | cytosol | 53.85 | 63.64 |
| PGSC0003DMT400069410 | Potato | cytosol | 80.34 | 63.51 |
| Os02t0175600-01 | Rice | nucleus | 77.78 | 63.19 |
| Zm00001d015375_P001 | Maize | cytosol, mitochondrion, plastid | 78.63 | 63.01 |
| Os03t0408300-00 | Rice | nucleus | 78.63 | 63.01 |
| TraesCS2B01G197200.1 | Wheat | cytosol, golgi, unclear | 77.78 | 62.76 |
| TraesCS2D01G178300.1 | Wheat | cytosol, golgi, unclear | 77.78 | 62.76 |
| TraesCS2A01G170800.1 | Wheat | cytosol, nucleus | 76.92 | 62.07 |
| GSMUA_Achr9P29110_001 | Banana | cytosol | 51.28 | 54.05 |
| GSMUA_Achr6P06280_001 | Banana | nucleus | 67.52 | 37.26 |
| VIT_12s0034g00430.t01 | Wine grape | cytosol, plastid | 2.56 | 2.8 |
| VIT_12s0034g00440.t01 | Wine grape | plastid | 1.71 | 1.79 |
| VIT_00s1889g00010.t01 | Wine grape | plastid | 0.0 | 0.0 |
Protein Annotations
| MapMan:17.1.2.1.28 | Gene3D:3.100.10.10 | EnsemblPlantsGene:Bra024577 | EnsemblPlants:Bra024577.1 | EnsemblPlants:Bra024577.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0030529 | InterPro:L18e/L15P_sf | UniProt:M4E722 | PFAM:PF00828 | ScanProsite:PS00475 |
| PANTHER:PTHR11721 | PANTHER:PTHR11721:SF10 | InterPro:Ribosomal_L15_CS | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | UniParc:UPI00025429FB |
Description
AT1G23290 (E=6e-029) RPL27A, RPL27AB | RPL27AB; structural constituent of ribosome
Coordinates
chrA09:-:24291307..24291747
Molecular Weight (calculated)
12790.9 Da
IEP (calculated)
11.386
GRAVY (calculated)
-0.631
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGVMHH HRILFDKYHP GYFGKDVKAK STKDKVPMID VTQHGFFKVL GKGHLPEGKP FVVKAKLISK
101: TAEKKIKEAG GAVVLTA
101: TAEKKIKEAG GAVVLTA
001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS SKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
Arabidopsis Description
RPL27AB60S ribosomal protein L27a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR33]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.