Factsheet for VIT_14s0066g00560.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g09110.t01	Wine grape	cytosol	96.58	96.58
VIT_00s0225g00020.t01	Wine grape	cytosol	90.41	90.41
GSMUA_Achr1P21900_001	Banana	cytosol	73.29	89.17
Bra003951.1-P	Field mustard	cytosol	86.99	86.99
Zm00001d022124_P001	Maize	plasma membrane, plastid	85.62	86.21
EER99694	Sorghum	cytosol	85.62	86.21
GSMUA_Achr8P30580_001	Banana	cytosol	58.22	85.86
Bra007929.1-P	Field mustard	cytosol	84.93	84.93
Bra016354.1-P	Field mustard	cytosol	84.93	84.35
Bra024577.1-P	Field mustard	cytosol	66.44	82.91
EES06343	Sorghum	cytosol	82.88	82.88
Os03t0408300-00	Rice	nucleus	81.51	81.51
Zm00001d015375_P001	Maize	cytosol, mitochondrion, plastid	81.51	81.51
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	80.82	81.38
Os02t0175600-01	Rice	nucleus	80.14	81.25
Os07t0613200-00	Rice	nucleus	80.82	80.82
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	80.14	80.69
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	78.77	79.31
GSMUA_Achr9P29110_001	Banana	cytosol	60.27	79.28
Bra012370.1-P	Field mustard	cytosol, mitochondrion	83.56	78.21
GSMUA_Achr6P06280_001	Banana	nucleus	69.86	48.11
VIT_12s0034g00430.t01	Wine grape	cytosol, plastid	1.37	1.87
VIT_12s0034g00440.t01	Wine grape	plastid	1.37	1.79
VIT_00s1889g00010.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

EntrezGene:100250874	wikigene:100250874	MapMan:17.1.2.1.28	Gene3D:3.100.10.10	UniProt:A5C234	EMBL:AM479354
ProteinID:CAN59887	ProteinID:CAN59887.1	ProteinID:CCB58471	ProteinID:CCB58471.1	EMBL:FN596252	GO:GO:0002181
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	InterPro:L18e/L15P_sf	EntrezGene:LOC100250874	wikigene:LOC100250874
HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR11721	PANTHER:PTHR11721:SF10	InterPro:Ribosomal_L15
InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	TIGR:TC63627	UniParc:UPI00015220C2	ArrayExpress:VIT_14s0066g00560
EnsemblPlantsGene:VIT_14s0066g00560	EnsemblPlants:VIT_14s0066g00560.t01	unigene:Vvi.184	RefSeq:XP_002274098	RefSeq:XP_002274098.1	:

Description

No Description!

Coordinates

chr14:+:27065160..27065697

Molecular Weight (calculated)

16299.1 Da

IEP (calculated)

11.193

GRAVY (calculated)

-0.529

Length

146 amino acids

Sequence
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFYC PIVNIDKLWS MVPQDVKDKA SPDNAPLIDV
101: TQFGYFKVLG KGALPSSQPI VVKAKLVSKI AEKKIKEAGG AVVLTA

Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.