Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
- plastid 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_12s0034g00430.t01 | Wine grape | cytosol, plastid | 61.76 | 58.88 |
| VIT_12s0034g00440.t01 | Wine grape | plastid | 52.94 | 48.21 |
| Bra012370.1-P | Field mustard | cytosol, mitochondrion | 0.98 | 0.64 |
| VIT_00s0225g00020.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| Os07t0613200-00 | Rice | nucleus | 0.0 | 0.0 |
| PGSC0003DMT400046820 | Potato | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400069410 | Potato | cytosol | 0.0 | 0.0 |
| Solyc03g112360.1.1 | Tomato | cytosol, nucleus, unclear | 0.0 | 0.0 |
| Solyc06g071720.1.1 | Tomato | nucleus | 0.0 | 0.0 |
| TraesCS2A01G170800.1 | Wheat | cytosol, nucleus | 0.0 | 0.0 |
| TraesCS2B01G197200.1 | Wheat | cytosol, golgi, unclear | 0.0 | 0.0 |
| TraesCS2D01G178300.1 | Wheat | cytosol, golgi, unclear | 0.0 | 0.0 |
| Os03t0408300-00 | Rice | nucleus | 0.0 | 0.0 |
| VIT_14s0066g00560.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| VIT_17s0000g09110.t01 | Wine grape | cytosol | 0.0 | 0.0 |
| Zm00001d015375_P001 | Maize | cytosol, mitochondrion, plastid | 0.0 | 0.0 |
| Zm00001d022124_P001 | Maize | plasma membrane, plastid | 0.0 | 0.0 |
| Bra003951.1-P | Field mustard | cytosol | 0.0 | 0.0 |
| Os02t0175600-01 | Rice | nucleus | 0.0 | 0.0 |
| KRH74528 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 0.0 | 0.0 |
| KRH69632 | Soybean | cytosol | 0.0 | 0.0 |
| GSMUA_Achr9P29110_001 | Banana | cytosol | 0.0 | 0.0 |
| GSMUA_Achr8P30580_001 | Banana | cytosol | 0.0 | 0.0 |
| GSMUA_Achr6P06280_001 | Banana | nucleus | 0.0 | 0.0 |
| GSMUA_Achr1P21900_001 | Banana | cytosol | 0.0 | 0.0 |
| EES06343 | Sorghum | cytosol | 0.0 | 0.0 |
| EER99694 | Sorghum | cytosol | 0.0 | 0.0 |
| CDY23497 | Canola | cytosol, mitochondrion | 0.0 | 0.0 |
| CDX80514 | Canola | plastid | 0.0 | 0.0 |
| Bra024577.1-P | Field mustard | cytosol | 0.0 | 0.0 |
| Bra016354.1-P | Field mustard | cytosol | 0.0 | 0.0 |
| Bra007929.1-P | Field mustard | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:3.100.10.10 | MapMan:35.2 | ProteinID:CCB57463 | ProteinID:CCB57463.1 | UniProt:F6HS04 | EMBL:FN596119 |
| GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0022625 | InterPro:L18e/L15P_sf | PANTHER:PTHR11721 | PANTHER:PTHR11721:SF10 | SUPFAM:SSF52080 |
| UniParc:UPI0002108886 | ArrayExpress:VIT_00s1889g00010 | EnsemblPlantsGene:VIT_00s1889g00010 | EnsemblPlants:VIT_00s1889g00010.t01 | : | : |
Description
No Description!
Coordinates
chrUn:-:40656943..40657305
Molecular Weight (calculated)
11163.7 Da
IEP (calculated)
10.325
GRAVY (calculated)
-0.142
Length
102 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSASTRST PVAAEMLKVC ITTASFFDKH HPGNFGKVGM RHFHKLRIKL HCPIVHIDKL WSMVPPAAGA PSEGDFQAKR QARKEEDEVL VFGLGLRLGP
101: SL
101: SL
001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS SKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
Arabidopsis Description
RPL27AB60S ribosomal protein L27a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR33]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.