Factsheet for VIT_17s0000g09110.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0066g00560.t01	Wine grape	cytosol	96.58	96.58
VIT_00s0225g00020.t01	Wine grape	cytosol	92.47	92.47
GSMUA_Achr1P21900_001	Banana	cytosol	73.29	89.17
Bra003951.1-P	Field mustard	cytosol	87.67	87.67
GSMUA_Achr8P30580_001	Banana	cytosol	58.22	85.86
Bra007929.1-P	Field mustard	cytosol	85.62	85.62
Bra016354.1-P	Field mustard	cytosol	85.62	85.03
Zm00001d022124_P001	Maize	plasma membrane, plastid	84.25	84.83
EER99694	Sorghum	cytosol	84.25	84.83
Bra024577.1-P	Field mustard	cytosol	67.12	83.76
EES06343	Sorghum	cytosol	82.19	82.19
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	80.14	80.69
Os03t0408300-00	Rice	nucleus	80.14	80.14
Os07t0613200-00	Rice	nucleus	80.14	80.14
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	79.45	80.0
Os02t0175600-01	Rice	nucleus	78.77	79.86
Zm00001d015375_P001	Maize	cytosol, mitochondrion, plastid	79.45	79.45
Bra012370.1-P	Field mustard	cytosol, mitochondrion	84.25	78.85
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	78.08	78.62
GSMUA_Achr9P29110_001	Banana	cytosol	59.59	78.38
GSMUA_Achr6P06280_001	Banana	nucleus	69.86	48.11
VIT_12s0034g00430.t01	Wine grape	cytosol, plastid	2.05	2.8
VIT_12s0034g00440.t01	Wine grape	plastid	1.37	1.79
VIT_00s1889g00010.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

EntrezGene:100250040	wikigene:100250040	MapMan:17.1.2.1.28	Gene3D:3.100.10.10	UniProt:A5BE36	EMBL:AM456215
ProteinID:CAN78902	ProteinID:CAN78902.1	ProteinID:CCB42944	ProteinID:CCB42944.1	EMBL:FN594950	GO:GO:0002181
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	InterPro:L18e/L15P_sf	EntrezGene:LOC100250040	wikigene:LOC100250040
HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR11721	PANTHER:PTHR11721:SF10	InterPro:Ribosomal_L15
InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	TIGR:TC54932	TIGR:TC55716	UniParc:UPI0001524401
ArrayExpress:VIT_17s0000g09110	EnsemblPlantsGene:VIT_17s0000g09110	EnsemblPlants:VIT_17s0000g09110.t01	unigene:Vvi.7907	RefSeq:XP_002281019	RefSeq:XP_002281019.1
RefSeq:XP_003634245	RefSeq:XP_003634245.1	:	:	:	:

Description

No Description!

Coordinates

chr17:-:10706448..10707059

Molecular Weight (calculated)

16351.2 Da

IEP (calculated)

11.136

GRAVY (calculated)

-0.536

Length

146 amino acids

Sequence
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFYC PIVNIDKLWS LIPQDVKDKA SPENAPLIDV
101: TQFGYFKVLG KGALPESKPI VVKAKLVSKI AEKKIKEAGG AVVLTA

Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.