CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022124_P001	Maize	plasma membrane, plastid	99.31	99.31
EES06343	Sorghum	cytosol	92.41	91.78
Os03t0408300-00	Rice	nucleus	91.03	90.41
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	90.34	90.34
GSMUA_Achr1P21900_001	Banana	cytosol	74.48	90.0
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	89.66	89.66
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	88.97	88.97
Os02t0175600-01	Rice	nucleus	88.28	88.89
GSMUA_Achr8P30580_001	Banana	cytosol	60.69	88.89
VIT_14s0066g00560.t01	Wine grape	cytosol	86.21	85.62
VIT_17s0000g09110.t01	Wine grape	cytosol	84.83	84.25
KRH63615	Soybean	endoplasmic reticulum, mitochondrion, nucleus	84.83	83.67
KRH54328	Soybean	cytosol	84.83	83.67
Bra003951.1-P	Field mustard	cytosol	84.14	83.56
KRH74528	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	84.83	83.11
VIT_00s0225g00020.t01	Wine grape	cytosol	83.45	82.88
CDY23497	Canola	cytosol, mitochondrion	35.86	82.54
Solyc06g071720.1.1	Tomato	nucleus	84.14	82.43
KRH69632	Soybean	cytosol	84.14	82.43
Solyc03g112360.1.1	Tomato	cytosol, nucleus, unclear	84.14	82.43
KRH57125	Soybean	cytosol	82.76	82.19
PGSC0003DMT400046820	Potato	cytosol	83.45	81.76
PGSC0003DMT400069410	Potato	cytosol	83.45	81.76
Bra016354.1-P	Field mustard	cytosol	82.76	81.63
KRH03232	Soybean	cytosol	82.07	81.51
Bra007929.1-P	Field mustard	cytosol	81.38	80.82
Bra024577.1-P	Field mustard	cytosol	64.83	80.34
GSMUA_Achr9P29110_001	Banana	cytosol	59.31	77.48
Bra012370.1-P	Field mustard	cytosol, mitochondrion	80.0	74.36
AT1G12960.1	Thale cress	nucleus	51.03	71.15
GSMUA_Achr6P06280_001	Banana	nucleus	72.41	49.53
CDX80514	Canola	plastid	51.03	32.03
VIT_12s0034g00430.t01	Wine grape	cytosol, plastid	1.38	1.87
VIT_12s0034g00440.t01	Wine grape	plastid	1.38	1.79
VIT_00s1889g00010.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.28	Gene3D:3.100.10.10	EntrezGene:8060674	UniProt:C5XDZ7	EnsemblPlants:EER99694	ProteinID:EER99694
ProteinID:EER99694.1	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	InterPro:L18e/L15P_sf
HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR11721	PANTHER:PTHR11721:SF11	InterPro:Ribosomal_L15
InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P	EnsemblPlantsGene:SORBI_3002G372400	SUPFAM:SSF52080	unigene:Sbi.5715	UniParc:UPI0001A83D29
RefSeq:XP_002463173.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:73073593..73074308

Molecular Weight (calculated)

16022.9 Da

IEP (calculated)

11.372

GRAVY (calculated)

-0.488

Length

145 amino acids

Sequence
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFYC PAVNIERLWS MVPADKAAEA GGDKAPQIDV
101: TQFGYFKVLG KGVLPPKPIV VKAKLISKVA EKKIKAAGGA VVLTA

Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.