CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23497	Canola	cytosol, mitochondrion	26.41	96.83
CDY25779	Canola	extracellular	29.44	66.67
CDX68339	Canola	mitochondrion	29.0	66.34
CDY09461	Canola	cytosol	41.56	65.75
CDY66307	Canola	cytosol	41.56	65.75
CDY61221	Canola	cytosol	41.13	65.07
GSMUA_Achr9P29110_001	Banana	cytosol	30.74	63.96
CDY23493	Canola	cytosol	31.17	61.54
CDX91707	Canola	cytosol	31.6	60.83
GSMUA_Achr8P30580_001	Banana	cytosol	25.97	60.61
CDY04732	Canola	cytosol	30.3	59.83
CDY21430	Canola	extracellular	30.3	59.83
CDY12475	Canola	extracellular	29.87	58.97
CDY41455	Canola	cytosol	29.44	57.63
CDY23496	Canola	cytosol	29.0	55.83
AT1G12960.1	Thale cress	nucleus	24.68	54.81
KRH69632	Soybean	cytosol	34.63	54.05
KRH74528	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	34.63	54.05
Solyc03g112360.1.1	Tomato	cytosol, nucleus, unclear	33.33	52.03
PGSC0003DMT400046820	Potato	cytosol	33.33	52.03
GSMUA_Achr1P21900_001	Banana	cytosol	26.84	51.67
Solyc06g071720.1.1	Tomato	nucleus	32.9	51.35
Zm00001d022124_P001	Maize	plasma membrane, plastid	32.03	51.03
EER99694	Sorghum	cytosol	32.03	51.03
PGSC0003DMT400069410	Potato	cytosol	32.47	50.68
Os07t0613200-00	Rice	nucleus	31.6	50.0
EES06343	Sorghum	cytosol	31.6	50.0
Zm00001d015375_P001	Maize	cytosol, mitochondrion, plastid	31.6	50.0
Os03t0408300-00	Rice	nucleus	31.17	49.32
Os02t0175600-01	Rice	nucleus	30.3	48.61
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	29.44	46.9
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	29.0	46.21
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	28.57	45.52
GSMUA_Achr6P06280_001	Banana	nucleus	25.54	27.83
VIT_00s1889g00010.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.28	Gene3D:3.100.10.10	GO:A0A078CWZ9	EnsemblPlants:CDX80514	ProteinID:CDX80514	ProteinID:CDX80514.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00133618001	InterPro:L18e/L15P_sf	PFAM:PF00828	ScanProsite:PS00475
PANTHER:PTHR11721	PANTHER:PTHR11721:SF10	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI0004EEBB79
SEG:seg	:	:	:	:	:

Description

BnaC07g29300D

Coordinates

chrLK031821:-:1039003..1041979

Molecular Weight (calculated)

25148.4 Da

IEP (calculated)

10.874

GRAVY (calculated)

-0.465

Length

231 amino acids

Sequence
(BLAST)

001: MKMRCNTGRR TICGQRKVQI GRSNPPSQPP SRSSVRPICP NRSKTKPQSS HPCSLNPSLQ HHQAAAAVVA IDSTPDRSNH QAAVVAIESA MDRSKHQAAV
101: ASPCIDKIRG KESSVAVDQK AVSCTGAVAG AQIGIPIRES RYARYFHKLR NKFHCPIVNL DRLWSLDPED VKAKSTKDKV PLIDVTQHGF FKVLGKGHLP
201: ENRPFVVKAK LISKTAEKKI KEAGGAVVLT A

Best Arabidopsis Sequence Match ( AT1G23290.1 )
(BLAST)

001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS SKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AB60S ribosomal protein L27a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.