CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23497	Canola	cytosol, mitochondrion	59.8	96.83
CDX68339	Canola	mitochondrion	90.2	91.09
CDX91707	Canola	cytosol	97.06	82.5
AT1G23290.1	Thale cress	cytosol	98.04	68.49
CDY09461	Canola	cytosol	94.12	65.75
CDY66307	Canola	cytosol	94.12	65.75
CDY61221	Canola	cytosol	93.14	65.07
Bra024577.1-P	Field mustard	cytosol	74.51	64.96
CDY04732	Canola	cytosol	74.51	64.96
CDY21430	Canola	extracellular	74.51	64.96
CDY41455	Canola	cytosol	74.51	64.41
CDY12475	Canola	extracellular	71.57	62.39
CDY23493	Canola	cytosol	70.59	61.54
CDY23496	Canola	cytosol	65.69	55.83
CDX80514	Canola	plastid	66.67	29.44

Protein Annotations

EnsemblPlants:CDY25779	EnsemblPlantsGene:GSBRNA2T00033180001	Gene3D:3.100.10.10	GO:A0A078GKI4	InterPro:L18e/L15P_sf	InterPro:Ribosomal_L18e/L15P
PANTHER:PTHR11721	PANTHER:PTHR11721:SF10	PFAM:PF00828	ProteinID:CDY25779	ProteinID:CDY25779.1	SUPFAM:SSF52080
UniParc:UPI0004EF1D8E	UniProt:A0A078GKI4	MapMan:17.1.2.1.28	:	:	:

Description

BnaA07g10030DBnaA07g10030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKI4]

Coordinates

chrLK032180:+:286855..287588

Molecular Weight (calculated)

11301.2 Da

IEP (calculated)

11.567

GRAVY (calculated)

-0.480

Length

102 amino acids

Sequence
(BLAST)

001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGYFGKVGM RYFHKLRNKF YCPIVNLDKL WSLVLGKGHL PEGKPFVVKA KLISKTAEKK IKEAGGAVVL
101: TA

Best Arabidopsis Sequence Match ( AT1G12960.1 )
(BLAST)

001: MTTSRKKTRN LREHVSVGHG RFGKHRKLPG SRGNAGVGMR YFHKLRNKFY CQIVNLDKLW SMVLGKGFLP ENKPVVVKAK LVSNTDEKKI KEAGSAVVLT
101: FLLY

Arabidopsis Description

RPL27AAPutative 60S ribosomal protein L27a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.