CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66307	Canola	cytosol	100.0	100.0
CDY61221	Canola	cytosol	99.32	99.32
CDY23493	Canola	cytosol	79.45	99.15
CDX68339	Canola	mitochondrion	68.49	99.01
CDY23497	Canola	cytosol, mitochondrion	42.47	98.41
AT1G70600.1	Thale cress	cytosol	97.95	97.95
Bra007929.1-P	Field mustard	cytosol	97.95	97.95
CDX91707	Canola	cytosol	78.77	95.83
CDY04732	Canola	cytosol	76.03	94.87
CDY21430	Canola	extracellular	76.03	94.87
CDY25779	Canola	extracellular	65.75	94.12
CDY41455	Canola	cytosol	76.03	94.07
CDY12475	Canola	extracellular	75.34	94.02
CDY23496	Canola	cytosol	74.66	90.83
CDX80514	Canola	plastid	65.75	41.56

Protein Annotations

MapMan:17.1.2.1.28	Gene3D:3.100.10.10	GO:A0A078F7W7	UniProt:A0A078F7W7	EnsemblPlants:CDY09461	ProteinID:CDY09461
ProteinID:CDY09461.1	ProteinID:CDY66307.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSBRNA2T00030973001	InterPro:L18e/L15P_sf	HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR11721
PANTHER:PTHR11721:SF10	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI0004EBC29D

Description

BnaC02g20030DBnaA07g38870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F7W7]

Coordinates

chrLK031996:-:215262..215916

Molecular Weight (calculated)

16482.4 Da

IEP (calculated)

11.403

GRAVY (calculated)

-0.595

Length

146 amino acids

Sequence
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDRLWS LVPEDVKAKA TKDKVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.