CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23497	Canola	cytosol, mitochondrion	61.39	98.41
CDY25779	Canola	extracellular	91.09	90.2
CDX91707	Canola	cytosol	95.05	80.0
Bra003951.1-P	Field mustard	cytosol	100.0	69.18
CDY09461	Canola	cytosol	99.01	68.49
CDY66307	Canola	cytosol	99.01	68.49
CDY61221	Canola	cytosol	98.02	67.81
CDY23493	Canola	cytosol	73.27	63.25
CDY04732	Canola	cytosol	69.31	59.83
CDY21430	Canola	extracellular	69.31	59.83
CDY41455	Canola	cytosol	69.31	59.32
CDY23496	Canola	cytosol	70.3	59.17
CDY12475	Canola	extracellular	68.32	58.97
CDX80514	Canola	plastid	66.34	29.0

Protein Annotations

EnsemblPlants:CDX68339	EnsemblPlantsGene:GSBRNA2T00099641001	Gene3D:3.100.10.10	GO:A0A078BX23	InterPro:L18e/L15P_sf	InterPro:Ribosomal_L18e/L15P
PANTHER:PTHR11721	PANTHER:PTHR11721:SF10	PFAM:PF00828	ProteinID:CDX68339	ProteinID:CDX68339.1	SUPFAM:SSF52080
UniParc:UPI0004EDFB8A	MapMan:17.1.2.1.28	:	:	:	:

Description

BnaA07g23790D

Coordinates

chrLK031787:+:5110767..5111486

Molecular Weight (calculated)

11282.1 Da

IEP (calculated)

11.968

GRAVY (calculated)

-0.612

Length

101 amino acids

Sequence
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGVGMR YFHKLRNKFY CPIVNLDRLW SLVLGKGHLP ENKPFVVKAK LISKTAEKKI KEAGGAVVLT
101: A

Best Arabidopsis Sequence Match ( AT1G12960.1 )
(BLAST)

001: MTTSRKKTRN LREHVSVGHG RFGKHRKLPG SRGNAGVGMR YFHKLRNKFY CQIVNLDKLW SMVLGKGFLP ENKPVVVKAK LVSNTDEKKI KEAGSAVVLT
101: FLLY

Arabidopsis Description

RPL27AAPutative 60S ribosomal protein L27a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.