Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 4
- nucleus 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX68339 | Canola | mitochondrion | 69.18 | 100.0 |
CDY23493 | Canola | cytosol | 80.14 | 100.0 |
Bra007929.1-P | Field mustard | cytosol | 96.58 | 96.58 |
Bra024577.1-P | Field mustard | cytosol | 76.03 | 94.87 |
Bra016354.1-P | Field mustard | cytosol | 95.21 | 94.56 |
CDY23496 | Canola | cytosol | 73.97 | 90.0 |
GSMUA_Achr1P21900_001 | Banana | cytosol | 73.29 | 89.17 |
GSMUA_Achr8P30580_001 | Banana | cytosol | 59.59 | 87.88 |
VIT_17s0000g09110.t01 | Wine grape | cytosol | 87.67 | 87.67 |
VIT_14s0066g00560.t01 | Wine grape | cytosol | 86.99 | 86.99 |
Bra012370.1-P | Field mustard | cytosol, mitochondrion | 92.47 | 86.54 |
KRH57125 | Soybean | cytosol | 86.3 | 86.3 |
KRH03232 | Soybean | cytosol | 85.62 | 85.62 |
KRH74528 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 86.3 | 85.14 |
KRH69632 | Soybean | cytosol | 86.3 | 85.14 |
KRH63615 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 85.62 | 85.03 |
KRH54328 | Soybean | cytosol | 85.62 | 85.03 |
VIT_00s0225g00020.t01 | Wine grape | cytosol | 84.93 | 84.93 |
Solyc03g112360.1.1 | Tomato | cytosol, nucleus, unclear | 85.62 | 84.46 |
PGSC0003DMT400046820 | Potato | cytosol | 85.62 | 84.46 |
Zm00001d022124_P001 | Maize | plasma membrane, plastid | 83.56 | 84.14 |
EER99694 | Sorghum | cytosol | 83.56 | 84.14 |
Solyc06g071720.1.1 | Tomato | nucleus | 84.25 | 83.11 |
PGSC0003DMT400069410 | Potato | cytosol | 83.56 | 82.43 |
EES06343 | Sorghum | cytosol | 82.19 | 82.19 |
Os07t0613200-00 | Rice | nucleus | 80.14 | 80.14 |
Os03t0408300-00 | Rice | nucleus | 80.14 | 80.14 |
TraesCS2D01G178300.1 | Wheat | cytosol, golgi, unclear | 79.45 | 80.0 |
Os02t0175600-01 | Rice | nucleus | 78.77 | 79.86 |
Zm00001d015375_P001 | Maize | cytosol, mitochondrion, plastid | 79.45 | 79.45 |
TraesCS2A01G170800.1 | Wheat | cytosol, nucleus | 78.77 | 79.31 |
TraesCS2B01G197200.1 | Wheat | cytosol, golgi, unclear | 77.4 | 77.93 |
GSMUA_Achr9P29110_001 | Banana | cytosol | 58.22 | 76.58 |
GSMUA_Achr6P06280_001 | Banana | nucleus | 71.23 | 49.06 |
VIT_12s0034g00430.t01 | Wine grape | cytosol, plastid | 2.05 | 2.8 |
VIT_12s0034g00440.t01 | Wine grape | plastid | 1.37 | 1.79 |
VIT_00s1889g00010.t01 | Wine grape | plastid | 0.0 | 0.0 |
Protein Annotations
MapMan:17.1.2.1.28 | Gene3D:3.100.10.10 | EnsemblPlantsGene:Bra003951 | EnsemblPlants:Bra003951.1 | EnsemblPlants:Bra003951.1-P | GO:GO:0003674 |
GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
GO:GO:0015934 | GO:GO:0019538 | GO:GO:0030529 | InterPro:L18e/L15P_sf | UniProt:M4CIB8 | HAMAP:MF_01341 |
PFAM:PF00828 | ScanProsite:PS00475 | PANTHER:PTHR11721 | PANTHER:PTHR11721:SF10 | InterPro:Ribosomal_L15 | InterPro:Ribosomal_L15_CS |
InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | UniParc:UPI0001BA840A | : | : | : |
Description
AT1G70600 (E=1e-083) | structural constituent of ribosome
Coordinates
chrA07:+:15934448..15934888
Molecular Weight (calculated)
16514.4 Da
IEP (calculated)
11.315
GRAVY (calculated)
-0.640
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFYC PIVNLDRLWS LVPEDVKAKS TKDKVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
Arabidopsis Description
RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.