Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09461 | Canola | cytosol | 90.83 | 74.66 |
| CDY66307 | Canola | cytosol | 90.83 | 74.66 |
| Bra003951.1-P | Field mustard | cytosol | 90.0 | 73.97 |
| CDY61221 | Canola | cytosol | 90.0 | 73.97 |
| CDX68339 | Canola | mitochondrion | 59.17 | 70.3 |
| CDY23493 | Canola | cytosol | 67.5 | 69.23 |
| CDX91707 | Canola | cytosol | 69.17 | 69.17 |
| CDY04732 | Canola | cytosol | 64.17 | 65.81 |
| CDY21430 | Canola | extracellular | 64.17 | 65.81 |
| CDY25779 | Canola | extracellular | 55.83 | 65.69 |
| CDY41455 | Canola | cytosol | 64.17 | 65.25 |
| CDY12475 | Canola | extracellular | 63.33 | 64.96 |
| CDY23497 | Canola | cytosol, mitochondrion | 29.17 | 55.56 |
| CDX80514 | Canola | plastid | 55.83 | 29.0 |
Protein Annotations
| EnsemblPlants:CDY23496 | EnsemblPlantsGene:GSBRNA2T00022130001 | Gene3D:3.100.10.10 | GO:A0A078GDR2 | InterPro:L18e/L15P_sf | InterPro:Ribosomal_L18e/L15P |
| PANTHER:PTHR11721 | PANTHER:PTHR11721:SF10 | PFAM:PF00828 | ProteinID:CDY23496 | ProteinID:CDY23496.1 | SUPFAM:SSF52080 |
| UniParc:UPI0004EE959B | UniProt:A0A078GDR2 | MapMan:35.1 | : | : | : |
Description
BnaC06g24650DBnaC06g24650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDR2]
Coordinates
chrLK032144:+:185050..185489
Molecular Weight (calculated)
13684.0 Da
IEP (calculated)
11.138
GRAVY (calculated)
-0.502
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRFKKNRK KRGHVSAGHG RIRKHRKHPG GRGIAGGMYH HMILFDKYHP GYLCKVGMWY FHKLRNKFHC PIVNLDRLWS LVPEDVKAKA TKDKVTLIDE
101: TQHGVFKVLG KAGGAVVLTA
101: TQHGVFKVLG KAGGAVVLTA
001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS SKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
Arabidopsis Description
RPL27AB60S ribosomal protein L27a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR33]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.