CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04732	Canola	cytosol	100.0	100.0
Bra024577.1-P	Field mustard	cytosol	99.15	99.15
CDY41455	Canola	cytosol	98.29	97.46
CDY12475	Canola	extracellular	95.73	95.73
CDY23493	Canola	cytosol	95.73	95.73
AT1G23290.1	Thale cress	cytosol	96.58	77.4
CDX91707	Canola	cytosol	78.63	76.67
CDY09461	Canola	cytosol	94.87	76.03
CDY66307	Canola	cytosol	94.87	76.03
CDY61221	Canola	cytosol	94.02	75.34
CDY25779	Canola	extracellular	64.96	74.51
CDX68339	Canola	mitochondrion	59.83	69.31
CDY23496	Canola	cytosol	65.81	64.17
CDY23497	Canola	cytosol, mitochondrion	33.33	61.9
CDX80514	Canola	plastid	59.83	30.3

Protein Annotations

MapMan:17.1.2.1.28	Gene3D:3.100.10.10	GO:A0A078G4Q0	UniProt:A0A078G4Q0	EnsemblPlants:CDY21430	ProteinID:CDY21430
ProteinID:CDY21430.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00015820001
InterPro:L18e/L15P_sf	HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR11721	PANTHER:PTHR11721:SF10
InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI0004EF36F4	:

Description

BnaA09g29970DBnaA09g29970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4Q0]

Coordinates

chrLK032120:+:658013..658680

Molecular Weight (calculated)

12748.8 Da

IEP (calculated)

11.386

GRAVY (calculated)

-0.670

Length

117 amino acids

Sequence
(BLAST)

001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKDVKAK STKDKVPMID VTQHGFFKVL GKGHLPEGKP FVVKAKLISK
101: TAEKKIKEAG GAVVLTA

Best Arabidopsis Sequence Match ( AT1G23290.1 )
(BLAST)

001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS SKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AB60S ribosomal protein L27a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.