Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY04732 | Canola | cytosol | 95.73 | 95.73 |
CDY21430 | Canola | extracellular | 95.73 | 95.73 |
CDY41455 | Canola | cytosol | 94.02 | 93.22 |
CDY12475 | Canola | extracellular | 93.16 | 93.16 |
Bra003951.1-P | Field mustard | cytosol | 100.0 | 80.14 |
CDY09461 | Canola | cytosol | 99.15 | 79.45 |
CDY66307 | Canola | cytosol | 99.15 | 79.45 |
CDY61221 | Canola | cytosol | 98.29 | 78.77 |
CDX91707 | Canola | cytosol | 76.92 | 75.0 |
CDX68339 | Canola | mitochondrion | 63.25 | 73.27 |
CDY25779 | Canola | extracellular | 61.54 | 70.59 |
CDY23496 | Canola | cytosol | 69.23 | 67.5 |
CDY23497 | Canola | cytosol, mitochondrion | 34.19 | 63.49 |
CDX80514 | Canola | plastid | 61.54 | 31.17 |
Protein Annotations
MapMan:17.1.2.1.28 | Gene3D:3.100.10.10 | GO:A0A078GFS9 | UniProt:A0A078GFS9 | EnsemblPlants:CDY23493 | ProteinID:CDY23493 |
ProteinID:CDY23493.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00022125001 |
InterPro:L18e/L15P_sf | HAMAP:MF_01341 | PFAM:PF00828 | ScanProsite:PS00475 | PANTHER:PTHR11721 | PANTHER:PTHR11721:SF10 |
InterPro:Ribosomal_L15 | InterPro:Ribosomal_L15_CS | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 | UniParc:UPI0004EEB823 | : |
Description
BnaC06g24620DBnaC06g24620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFS9]
Coordinates
chrLK032144:+:173184..173899
Molecular Weight (calculated)
12937.0 Da
IEP (calculated)
11.492
GRAVY (calculated)
-0.764
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKDVKAK STKDKVPLID VTQHGFFKVL GKGHLPENKP FVVKAKLISK
101: TAEKKIKEAG GAVVLTA
101: TAEKKIKEAG GAVVLTA
001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
Arabidopsis Description
RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.