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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY04732 Canola cytosol 95.73 95.73
CDY21430 Canola extracellular 95.73 95.73
CDY41455 Canola cytosol 94.02 93.22
CDY12475 Canola extracellular 93.16 93.16
Bra003951.1-P Field mustard cytosol 100.0 80.14
CDY09461 Canola cytosol 99.15 79.45
CDY66307 Canola cytosol 99.15 79.45
CDY61221 Canola cytosol 98.29 78.77
CDX91707 Canola cytosol 76.92 75.0
CDX68339 Canola mitochondrion 63.25 73.27
CDY25779 Canola extracellular 61.54 70.59
CDY23496 Canola cytosol 69.23 67.5
CDY23497 Canola cytosol, mitochondrion 34.19 63.49
CDX80514 Canola plastid 61.54 31.17
Protein Annotations
MapMan:17.1.2.1.28Gene3D:3.100.10.10GO:A0A078GFS9UniProt:A0A078GFS9EnsemblPlants:CDY23493ProteinID:CDY23493
ProteinID:CDY23493.1GO:GO:0003674GO:GO:0003735GO:GO:0005198GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0015934GO:GO:0019538GO:GO:0030529EnsemblPlantsGene:GSBRNA2T00022125001
InterPro:L18e/L15P_sfHAMAP:MF_01341PFAM:PF00828ScanProsite:PS00475PANTHER:PTHR11721PANTHER:PTHR11721:SF10
InterPro:Ribosomal_L15InterPro:Ribosomal_L15_CSInterPro:Ribosomal_L18e/L15PSUPFAM:SSF52080UniParc:UPI0004EEB823:
Description
BnaC06g24620DBnaC06g24620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFS9]
Coordinates
chrLK032144:+:173184..173899
Molecular Weight (calculated)
12937.0 Da
IEP (calculated)
11.492
GRAVY (calculated)
-0.764
Length
117 amino acids
Sequence
(BLAST)
001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKDVKAK STKDKVPLID VTQHGFFKVL GKGHLPENKP FVVKAKLISK
101: TAEKKIKEAG GAVVLTA
Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)
001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
Arabidopsis Description
RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.