Factsheet for PGSC0003DMT400046820

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112360.1.1	Tomato	cytosol, nucleus, unclear	97.97	97.97
PGSC0003DMT400069410	Potato	cytosol	93.24	93.24
GSMUA_Achr1P21900_001	Banana	cytosol	70.27	86.67
KRH74528	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	86.49	86.49
CDY23497	Canola	cytosol, mitochondrion	36.49	85.71
Bra003951.1-P	Field mustard	cytosol	84.46	85.62
GSMUA_Achr8P30580_001	Banana	cytosol	56.76	84.85
KRH69632	Soybean	cytosol	84.46	84.46
Zm00001d022124_P001	Maize	plasma membrane, plastid	81.76	83.45
EER99694	Sorghum	cytosol	81.76	83.45
Bra007929.1-P	Field mustard	cytosol	81.08	82.19
Bra016354.1-P	Field mustard	cytosol	81.08	81.63
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	79.73	81.38
Bra024577.1-P	Field mustard	cytosol	64.19	81.2
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	79.05	80.69
Os07t0613200-00	Rice	nucleus	79.05	80.14
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	78.38	80.0
Os02t0175600-01	Rice	nucleus	77.7	79.86
Os03t0408300-00	Rice	nucleus	78.38	79.45
EES06343	Sorghum	cytosol	78.38	79.45
Zm00001d015375_P001	Maize	cytosol, mitochondrion, plastid	77.03	78.08
GSMUA_Achr9P29110_001	Banana	cytosol	58.11	77.48
Bra012370.1-P	Field mustard	cytosol, mitochondrion	79.05	75.0
AT1G12960.1	Thale cress	nucleus	51.35	73.08
GSMUA_Achr6P06280_001	Banana	nucleus	68.92	48.11
CDX80514	Canola	plastid	52.03	33.33
VIT_00s1889g00010.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

EntrezGene:102606393	MapMan:17.1.2.1.28	Gene3D:3.100.10.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538
GO:GO:0030529	InterPro:L18e/L15P_sf	UniProt:M1BJP4	HAMAP:MF_01341	PFAM:PF00828	EnsemblPlantsGene:PGSC0003DMG400018180
PGSC:PGSC0003DMG400018180	EnsemblPlants:PGSC0003DMT400046820	ScanProsite:PS00475	PANTHER:PTHR11721	PANTHER:PTHR11721:SF10	InterPro:Ribosomal_L15
InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI0002966C28	RefSeq:XP_006344458.1	:

Description

Ribosomal protein L27a [Source:PGSC_GENE;Acc:PGSC0003DMG400018180]

Coordinates

chr3:+:52142765..52143471

Molecular Weight (calculated)

16390.1 Da

IEP (calculated)

11.117

GRAVY (calculated)

-0.568

Length

148 amino acids

Sequence
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RVGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFYC PTVNIDTLWS LVPQEVKDKA AASKGSAPVI
101: DVTQYGYFKV LGKGVLPENQ AVVVKAKLIS KNAEKKIKEG GGAVVLTA

Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.