CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74528	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	97.3	97.3
KRH63615	Soybean	endoplasmic reticulum, mitochondrion, nucleus	89.19	89.8
KRH54328	Soybean	cytosol	89.19	89.8
KRH57125	Soybean	cytosol	87.84	89.04
KRH03232	Soybean	cytosol	87.84	89.04
Bra003951.1-P	Field mustard	cytosol	85.14	86.3
GSMUA_Achr1P21900_001	Banana	cytosol	69.59	85.83
CDY23497	Canola	cytosol, mitochondrion	36.49	85.71
Solyc06g071720.1.1	Tomato	nucleus	85.14	85.14
Solyc03g112360.1.1	Tomato	cytosol, nucleus, unclear	85.14	85.14
GSMUA_Achr8P30580_001	Banana	cytosol	56.76	84.85
PGSC0003DMT400069410	Potato	cytosol	84.46	84.46
PGSC0003DMT400046820	Potato	cytosol	84.46	84.46
Zm00001d022124_P001	Maize	plasma membrane, plastid	82.43	84.14
EER99694	Sorghum	cytosol	82.43	84.14
Bra024577.1-P	Field mustard	cytosol	65.54	82.91
Bra007929.1-P	Field mustard	cytosol	81.76	82.88
EES06343	Sorghum	cytosol	81.08	82.19
Bra016354.1-P	Field mustard	cytosol	81.08	81.63
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	79.05	80.69
Os02t0175600-01	Rice	nucleus	78.38	80.56
Os03t0408300-00	Rice	nucleus	79.05	80.14
Zm00001d015375_P001	Maize	cytosol, mitochondrion, plastid	79.05	80.14
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	78.38	80.0
Os07t0613200-00	Rice	nucleus	78.38	79.45
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	77.03	78.62
GSMUA_Achr9P29110_001	Banana	cytosol	56.76	75.68
Bra012370.1-P	Field mustard	cytosol, mitochondrion	79.73	75.64
AT1G12960.1	Thale cress	nucleus	50.68	72.12
GSMUA_Achr6P06280_001	Banana	nucleus	67.57	47.17
CDX80514	Canola	plastid	54.05	34.63
VIT_00s1889g00010.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.28	Gene3D:3.100.10.10	EMBL:ACUP02000723	EnsemblPlantsGene:GLYMA_02G038700	GO:GO:0002181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538
GO:GO:0022625	GO:GO:0030529	UniProt:I1JC73	EnsemblPlants:KRH69632	ProteinID:KRH69632	ProteinID:KRH69632.1
InterPro:L18e/L15P_sf	HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR11721	PANTHER:PTHR11721:SF10
InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI00023BE188	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:3616109..3617272

Molecular Weight (calculated)

16656.6 Da

IEP (calculated)

11.414

GRAVY (calculated)

-0.591

Length

148 amino acids

Sequence
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GFFGKVGMRY FHKLRNKFYS PIVNVEKLWS LIPQDAKEKA LKSKDTAPLI
101: DVTQHGYFKV LGKGVLPQNQ PFVVKAKLIS KIAEKKIKEA GGAVLLTA

Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.