Factsheet for GSMUA_Achr9P29110_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23497	Canola	cytosol, mitochondrion	45.95	80.95
GSMUA_Achr1P21900_001	Banana	cytosol	71.17	65.83
GSMUA_Achr8P30580_001	Banana	cytosol	55.86	62.63
Zm00001d015375_P001	Maize	cytosol, mitochondrion, plastid	81.08	61.64
Os02t0175600-01	Rice	nucleus	78.38	60.42
VIT_14s0066g00560.t01	Wine grape	cytosol	79.28	60.27
KRH63615	Soybean	endoplasmic reticulum, mitochondrion, nucleus	79.28	59.86
KRH54328	Soybean	cytosol	79.28	59.86
VIT_17s0000g09110.t01	Wine grape	cytosol	78.38	59.59
Os07t0613200-00	Rice	nucleus	78.38	59.59
EER99694	Sorghum	cytosol	77.48	59.31
Zm00001d022124_P001	Maize	plasma membrane, plastid	77.48	59.31
Os03t0408300-00	Rice	nucleus	77.48	58.9
PGSC0003DMT400069410	Potato	cytosol	78.38	58.78
Solyc06g071720.1.1	Tomato	nucleus	78.38	58.78
Bra003951.1-P	Field mustard	cytosol	76.58	58.22
VIT_00s0225g00020.t01	Wine grape	cytosol	76.58	58.22
KRH57125	Soybean	cytosol	76.58	58.22
EES06343	Sorghum	cytosol	76.58	58.22
PGSC0003DMT400046820	Potato	cytosol	77.48	58.11
Solyc03g112360.1.1	Tomato	cytosol, nucleus, unclear	77.48	58.11
KRH03232	Soybean	cytosol	75.68	57.53
KRH74528	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	76.58	57.43
Bra016354.1-P	Field mustard	cytosol	75.68	57.14
Bra007929.1-P	Field mustard	cytosol	74.77	56.85
KRH69632	Soybean	cytosol	75.68	56.76
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	73.87	56.55
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	73.87	56.55
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	72.97	55.86
Bra024577.1-P	Field mustard	cytosol	54.05	51.28
Bra012370.1-P	Field mustard	cytosol, mitochondrion	72.07	51.28
AT1G12960.1	Thale cress	nucleus	42.34	45.19
GSMUA_Achr6P06280_001	Banana	nucleus	67.57	35.38
CDX80514	Canola	plastid	63.96	30.74
VIT_12s0034g00430.t01	Wine grape	cytosol, plastid	1.8	1.87
VIT_12s0034g00440.t01	Wine grape	plastid	1.8	1.79
VIT_00s1889g00010.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.28	Gene3D:3.100.10.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSMUA_Achr9G29110_001
EnsemblPlants:GSMUA_Achr9P29110_001	EnsemblPlants:GSMUA_Achr9T29110_001	InterPro:L18e/L15P_sf	UniProt:M0U4G8	PFAM:PF00828	ScanProsite:PS00475
PANTHER:PTHR11721	PANTHER:PTHR11721:SF10	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI000295CF70
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L27a-3 [Source:GMGC_GENE;Acc:GSMUA_Achr9G29110_001]

Coordinates

chr9:-:32873107..32873728

Molecular Weight (calculated)

12327.3 Da

IEP (calculated)

10.697

GRAVY (calculated)

-0.014

Length

111 amino acids

Sequence
(BLAST)

001: MHHHRILFDK YHPGYFGKVG MRYFHRLRNK FHCPAVNVDR LWSLVPDAVK DAATKDAAAA PLIDVTQFGY FKVLGKGMLP SDRPVVVKAK LISKIAEKKI
101: KAAGGAVVLT A

Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.