CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03232	Soybean	cytosol	97.95	97.95
KRH63615	Soybean	endoplasmic reticulum, mitochondrion, nucleus	91.78	91.16
KRH54328	Soybean	cytosol	91.78	91.16
KRH74528	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	91.1	89.86
GSMUA_Achr1P21900_001	Banana	cytosol	72.6	88.33
KRH69632	Soybean	cytosol	89.04	87.84
Bra003951.1-P	Field mustard	cytosol	86.3	86.3
GSMUA_Achr8P30580_001	Banana	cytosol	58.22	85.86
Bra007929.1-P	Field mustard	cytosol	84.25	84.25
EER99694	Sorghum	cytosol	82.19	82.76
Zm00001d022124_P001	Maize	plasma membrane, plastid	82.19	82.76
Bra016354.1-P	Field mustard	cytosol	82.88	82.31
Bra024577.1-P	Field mustard	cytosol	65.07	81.2
EES06343	Sorghum	cytosol	80.14	80.14
Os07t0613200-00	Rice	nucleus	79.45	79.45
Os02t0175600-01	Rice	nucleus	78.08	79.17
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	78.08	78.62
Zm00001d015375_P001	Maize	cytosol, mitochondrion, plastid	78.08	78.08
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	77.4	77.93
Os03t0408300-00	Rice	nucleus	77.4	77.4
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	76.71	77.24
GSMUA_Achr9P29110_001	Banana	cytosol	58.22	76.58
Bra012370.1-P	Field mustard	cytosol, mitochondrion	81.51	76.28
AT1G12960.1	Thale cress	nucleus	54.11	75.96
GSMUA_Achr6P06280_001	Banana	nucleus	69.18	47.64

Protein Annotations

EntrezGene:100527293	MapMan:17.1.2.1.28	Gene3D:3.100.10.10	EMBL:ACUP02002814	EMBL:BT092124	UniProt:C6T3W3
EnsemblPlantsGene:GLYMA_05G040900	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529	EnsemblPlants:KRH57125
ProteinID:KRH57125	ProteinID:KRH57125.1	ProteinID:KRH57126.1	InterPro:L18e/L15P_sf	HAMAP:MF_01341	PFAM:PF00828
ScanProsite:PS00475	PANTHER:PTHR11721	PANTHER:PTHR11721:SF10	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P
SUPFAM:SSF52080	UniParc:UPI0001B15633	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:3685657..3687817

Molecular Weight (calculated)

16363.3 Da

IEP (calculated)

11.299

GRAVY (calculated)

-0.516

Length

146 amino acids

Sequence
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GFFGKVGMRY FHKLRNKFYC PIVNIDKLWS LLPQEAKDKA TADKAPLLDV
101: TQFGYFKVLG KGVLPQNQPL VVKAKLVSKI AEKKIKEAGG AVVLTA

Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.