Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23497 | Canola | cytosol, mitochondrion | 50.96 | 84.13 |
| GSMUA_Achr8P30580_001 | Banana | cytosol | 66.35 | 69.7 |
| GSMUA_Achr1P21900_001 | Banana | cytosol | 70.19 | 60.83 |
| AT1G70600.1 | Thale cress | cytosol | 77.88 | 55.48 |
| AT1G23290.1 | Thale cress | cytosol | 76.92 | 54.79 |
| KRH57125 | Soybean | cytosol | 75.96 | 54.11 |
| KRH54328 | Soybean | cytosol | 74.04 | 52.38 |
| KRH63615 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 74.04 | 52.38 |
| KRH03232 | Soybean | cytosol | 73.08 | 52.05 |
| Solyc03g112360.1.1 | Tomato | cytosol, nucleus, unclear | 74.04 | 52.03 |
| EES06343 | Sorghum | cytosol | 72.12 | 51.37 |
| KRH74528 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 73.08 | 51.35 |
| Solyc06g071720.1.1 | Tomato | nucleus | 73.08 | 51.35 |
| PGSC0003DMT400069410 | Potato | cytosol | 73.08 | 51.35 |
| PGSC0003DMT400046820 | Potato | cytosol | 73.08 | 51.35 |
| EER99694 | Sorghum | cytosol | 71.15 | 51.03 |
| Zm00001d022124_P001 | Maize | plasma membrane, plastid | 71.15 | 51.03 |
| KRH69632 | Soybean | cytosol | 72.12 | 50.68 |
| Os07t0613200-00 | Rice | nucleus | 70.19 | 50.0 |
| Zm00001d015375_P001 | Maize | cytosol, mitochondrion, plastid | 69.23 | 49.32 |
| TraesCS2A01G170800.1 | Wheat | cytosol, nucleus | 68.27 | 48.97 |
| TraesCS2D01G178300.1 | Wheat | cytosol, golgi, unclear | 68.27 | 48.97 |
| TraesCS2B01G197200.1 | Wheat | cytosol, golgi, unclear | 67.31 | 48.28 |
| Os03t0408300-00 | Rice | nucleus | 67.31 | 47.95 |
| Os02t0175600-01 | Rice | nucleus | 66.35 | 47.92 |
| GSMUA_Achr9P29110_001 | Banana | cytosol | 45.19 | 42.34 |
| GSMUA_Achr6P06280_001 | Banana | nucleus | 64.42 | 31.6 |
| CDX80514 | Canola | plastid | 54.81 | 24.68 |
| VIT_12s0034g00430.t01 | Wine grape | cytosol, plastid | 2.88 | 2.8 |
| VIT_12s0034g00440.t01 | Wine grape | plastid | 1.92 | 1.79 |
Protein Annotations
| MapMan:17.1.2.1.28 | Gene3D:3.100.10.10 | EntrezGene:837854 | ProteinID:AAF78501.1 | ProteinID:AEE28954.1 | ArrayExpress:AT1G12960 |
| EnsemblPlantsGene:AT1G12960 | RefSeq:AT1G12960 | TAIR:AT1G12960 | RefSeq:AT1G12960-TAIR-G | EnsemblPlants:AT1G12960.1 | TAIR:AT1G12960.1 |
| Unigene:At.51592 | GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0030529 | InterPro:L18e/L15P_sf | RefSeq:NP_172756.1 |
| PANTHER:PTHR11721 | PANTHER:PTHR11721:SF10 | UniProt:Q9LPV3 | SUPFAM:SSF52080 | UniParc:UPI000009E420 | : |
Description
RPL27AAPutative 60S ribosomal protein L27a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV3]
Coordinates
chr1:-:4422707..4423155
Molecular Weight (calculated)
11814.7 Da
IEP (calculated)
11.310
GRAVY (calculated)
-0.427
Length
104 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTSRKKTRN LREHVSVGHG RFGKHRKLPG SRGNAGVGMR YFHKLRNKFY CQIVNLDKLW SMVLGKGFLP ENKPVVVKAK LVSNTDEKKI KEAGSAVVLT
101: FLLY
101: FLLY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.