Factsheet for GSMUA_Achr1P21900_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P30580_001	Banana	cytosol	80.83	97.98
CDY23497	Canola	cytosol, mitochondrion	41.67	79.37
Os02t0175600-01	Rice	nucleus	91.67	76.39
Os03t0408300-00	Rice	nucleus	90.83	74.66
Zm00001d022124_P001	Maize	plasma membrane, plastid	90.0	74.48
EER99694	Sorghum	cytosol	90.0	74.48
Zm00001d015375_P001	Maize	cytosol, mitochondrion, plastid	90.0	73.97
Bra003951.1-P	Field mustard	cytosol	89.17	73.29
VIT_17s0000g09110.t01	Wine grape	cytosol	89.17	73.29
VIT_14s0066g00560.t01	Wine grape	cytosol	89.17	73.29
EES06343	Sorghum	cytosol	88.33	72.6
KRH57125	Soybean	cytosol	88.33	72.6
VIT_00s0225g00020.t01	Wine grape	cytosol	87.5	71.92
Os07t0613200-00	Rice	nucleus	87.5	71.92
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	86.67	71.72
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	86.67	71.72
Solyc06g071720.1.1	Tomato	nucleus	88.33	71.62
KRH54328	Soybean	cytosol	87.5	71.43
KRH63615	Soybean	endoplasmic reticulum, mitochondrion, nucleus	87.5	71.43
Bra007929.1-P	Field mustard	cytosol	86.67	71.23
GSMUA_Achr9P29110_001	Banana	cytosol	65.83	71.17
PGSC0003DMT400069410	Potato	cytosol	87.5	70.95
Solyc03g112360.1.1	Tomato	cytosol, nucleus, unclear	87.5	70.95
Bra016354.1-P	Field mustard	cytosol	86.67	70.75
KRH03232	Soybean	cytosol	85.83	70.55
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	85.0	70.34
PGSC0003DMT400046820	Potato	cytosol	86.67	70.27
AT1G12960.1	Thale cress	nucleus	60.83	70.19
KRH74528	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	85.83	69.59
KRH69632	Soybean	cytosol	85.83	69.59
Bra024577.1-P	Field mustard	cytosol	66.67	68.38
Bra012370.1-P	Field mustard	cytosol, mitochondrion	83.33	64.1
GSMUA_Achr6P06280_001	Banana	nucleus	93.33	52.83
CDX80514	Canola	plastid	51.67	26.84
VIT_12s0034g00430.t01	Wine grape	cytosol, plastid	1.67	1.87
VIT_12s0034g00440.t01	Wine grape	plastid	1.67	1.79
VIT_00s1889g00010.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr1P21900_001	EnsemblPlants:GSMUA_Achr1T21900_001	EnsemblPlantsGene:GSMUA_Achr1G21900_001	Gene3D:3.100.10.10	InterPro:L18e/L15P_sf	InterPro:Ribosomal_L18e/L15P
PANTHER:PTHR11721	PANTHER:PTHR11721:SF10	PFAM:PF00828	SEG:seg	SUPFAM:SSF52080	UniParc:UPI000296A783
UniProt:M0S1Z8	MapMan:17.1.2.1.28	:	:	:	:

Description

60S ribosomal protein L27a-3 [Source:GMGC_GENE;Acc:GSMUA_Achr1G21900_001]

Coordinates

chr1:+:16430428..16431375

Molecular Weight (calculated)

13419.7 Da

IEP (calculated)

12.145

GRAVY (calculated)

-0.553

Length

120 amino acids

Sequence
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGNVGMRY FHRLRNKFHC PAVNVDRLWS LVLGKGMLPP DRPVVVKAKL
101: VSKIAEKKIK AAGGAVVLTA

Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.