Factsheet for Os02t0175600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 23777608
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0408300-00	Rice	nucleus	95.83	94.52
GSMUA_Achr1P21900_001	Banana	cytosol	76.39	91.67
GSMUA_Achr8P30580_001	Banana	cytosol	62.5	90.91
EER99694	Sorghum	cytosol	88.89	88.28
Zm00001d022124_P001	Maize	plasma membrane, plastid	88.19	87.59
Os07t0613200-00	Rice	nucleus	88.19	86.99
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	86.81	86.21
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	86.11	85.52
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	86.11	85.52
VIT_00s0225g00020.t01	Wine grape	cytosol	82.64	81.51
VIT_14s0066g00560.t01	Wine grape	cytosol	81.25	80.14
Bra003951.1-P	Field mustard	cytosol	79.86	78.77
VIT_17s0000g09110.t01	Wine grape	cytosol	79.86	78.77
KRH69632	Soybean	cytosol	80.56	78.38
GSMUA_Achr9P29110_001	Banana	cytosol	60.42	78.38
Solyc03g112360.1.1	Tomato	cytosol, nucleus, unclear	80.56	78.38
KRH54328	Soybean	cytosol	79.86	78.23
KRH63615	Soybean	endoplasmic reticulum, mitochondrion, nucleus	79.86	78.23
KRH57125	Soybean	cytosol	79.17	78.08
Bra024577.1-P	Field mustard	cytosol	63.19	77.78
Solyc06g071720.1.1	Tomato	nucleus	79.86	77.7
PGSC0003DMT400046820	Potato	cytosol	79.86	77.7
KRH74528	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	79.86	77.7
KRH03232	Soybean	cytosol	78.47	77.4
PGSC0003DMT400069410	Potato	cytosol	79.17	77.03
Bra007929.1-P	Field mustard	cytosol	77.78	76.71
Bra016354.1-P	Field mustard	cytosol	77.78	76.19
CDY23497	Canola	cytosol, mitochondrion	32.64	74.6
Bra012370.1-P	Field mustard	cytosol, mitochondrion	75.0	69.23
AT1G12960.1	Thale cress	nucleus	47.92	66.35
GSMUA_Achr6P06280_001	Banana	nucleus	74.31	50.47
CDX80514	Canola	plastid	48.61	30.3
VIT_12s0034g00430.t01	Wine grape	cytosol, plastid	1.39	1.87
VIT_12s0034g00440.t01	Wine grape	plastid	1.39	1.79
VIT_00s1889g00010.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.28	Gene3D:3.100.10.10	EntrezGene:4328472	EMBL:AK121069	ProteinID:BAD27612.1	ProteinID:BAF07970.1
ProteinID:BAS77248.1	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	InterPro:L18e/L15P_sf	HAMAP:MF_01341
EnsemblPlantsGene:Os02g0175600	EnsemblPlants:Os02t0175600-01	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR11721	PANTHER:PTHR11721:SF11
UniProt:Q6EUQ7	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI00003CE46D
RefSeq:XP_015627196.1	SEG:seg	:	:	:	:

Description

Similar to 60S ribosomal protein L27a (Fragment). (Os02t0175600-01)

Coordinates

chr2:+:4134903..4135628

Molecular Weight (calculated)

15796.6 Da

IEP (calculated)

11.749

GRAVY (calculated)

-0.435

Length

144 amino acids

Sequence
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHRLSNRFHC PAVNVERLWS MVPAEAGAGA GKAPVIDVTQ
101: FGYTKVLGKG MLPPERPIVV KAKLISKVAE KKIKAAGGAV LLTA

Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.