Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 4
- mitochondrion 2
- nucleus 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
27291164
endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH69632 | Soybean | cytosol | 97.3 | 97.3 |
KRH63615 | Soybean | endoplasmic reticulum, mitochondrion, nucleus | 91.22 | 91.84 |
KRH54328 | Soybean | cytosol | 91.22 | 91.84 |
KRH57125 | Soybean | cytosol | 89.86 | 91.1 |
KRH03232 | Soybean | cytosol | 89.86 | 91.1 |
Solyc06g071720.1.1 | Tomato | nucleus | 87.16 | 87.16 |
Solyc03g112360.1.1 | Tomato | cytosol, nucleus, unclear | 87.16 | 87.16 |
PGSC0003DMT400069410 | Potato | cytosol | 86.49 | 86.49 |
PGSC0003DMT400046820 | Potato | cytosol | 86.49 | 86.49 |
Bra003951.1-P | Field mustard | cytosol | 85.14 | 86.3 |
GSMUA_Achr1P21900_001 | Banana | cytosol | 69.59 | 85.83 |
CDY23497 | Canola | cytosol, mitochondrion | 36.49 | 85.71 |
GSMUA_Achr8P30580_001 | Banana | cytosol | 56.76 | 84.85 |
Zm00001d022124_P001 | Maize | plasma membrane, plastid | 83.11 | 84.83 |
EER99694 | Sorghum | cytosol | 83.11 | 84.83 |
Bra007929.1-P | Field mustard | cytosol | 81.76 | 82.88 |
Bra024577.1-P | Field mustard | cytosol | 64.86 | 82.05 |
Bra016354.1-P | Field mustard | cytosol | 81.08 | 81.63 |
EES06343 | Sorghum | cytosol | 80.41 | 81.51 |
TraesCS2D01G178300.1 | Wheat | cytosol, golgi, unclear | 78.38 | 80.0 |
Os02t0175600-01 | Rice | nucleus | 77.7 | 79.86 |
Zm00001d015375_P001 | Maize | cytosol, mitochondrion, plastid | 78.38 | 79.45 |
Os03t0408300-00 | Rice | nucleus | 78.38 | 79.45 |
TraesCS2A01G170800.1 | Wheat | cytosol, nucleus | 77.7 | 79.31 |
Os07t0613200-00 | Rice | nucleus | 77.7 | 78.77 |
TraesCS2B01G197200.1 | Wheat | cytosol, golgi, unclear | 76.35 | 77.93 |
GSMUA_Achr9P29110_001 | Banana | cytosol | 57.43 | 76.58 |
Bra012370.1-P | Field mustard | cytosol, mitochondrion | 79.73 | 75.64 |
AT1G12960.1 | Thale cress | nucleus | 51.35 | 73.08 |
GSMUA_Achr6P06280_001 | Banana | nucleus | 67.57 | 47.17 |
CDX80514 | Canola | plastid | 54.05 | 34.63 |
VIT_00s1889g00010.t01 | Wine grape | plastid | 0.0 | 0.0 |
Protein Annotations
EntrezGene:100817971 | MapMan:17.1.2.1.28 | Gene3D:3.100.10.10 | EMBL:ACUP02000044 | EMBL:BT092935 | UniProt:C6T670 |
EnsemblPlantsGene:GLYMA_01G026100 | GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009987 | GO:GO:0015934 | GO:GO:0019538 | GO:GO:0022625 | GO:GO:0030529 | EnsemblPlants:KRH74528 |
ProteinID:KRH74528 | ProteinID:KRH74528.1 | InterPro:L18e/L15P_sf | HAMAP:MF_01341 | PFAM:PF00828 | ScanProsite:PS00475 |
PANTHER:PTHR11721 | PANTHER:PTHR11721:SF10 | InterPro:Ribosomal_L15 | InterPro:Ribosomal_L15_CS | InterPro:Ribosomal_L18e/L15P | SUPFAM:SSF52080 |
UniParc:UPI0001B16074 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:2741832..2744918
Molecular Weight (calculated)
16608.6 Da
IEP (calculated)
11.414
GRAVY (calculated)
-0.577
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GFFGKVGMRY FHKLRNKFYS PIVNIDKLWS LIPQDAKDKA LKSKDTAPLI
101: DVTQHGYFKV LGKGVLPQNQ PIVVKAKLIS KIAEKKIKEA GGAVLLTA
101: DVTQHGYFKV LGKGVLPQNQ PIVVKAKLIS KIAEKKIKEA GGAVLLTA
001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
Arabidopsis Description
RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.