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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, cytosol

Predictor Summary:
  • plastid 1
  • cytosol 4
  • mitochondrion 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, mitochondrion, nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:mitochondrion, nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH69632 Soybean cytosol 97.3 97.3
KRH63615 Soybean endoplasmic reticulum, mitochondrion, nucleus 91.22 91.84
KRH54328 Soybean cytosol 91.22 91.84
KRH57125 Soybean cytosol 89.86 91.1
KRH03232 Soybean cytosol 89.86 91.1
Solyc06g071720.1.1 Tomato nucleus 87.16 87.16
Solyc03g112360.1.1 Tomato cytosol, nucleus, unclear 87.16 87.16
PGSC0003DMT400069410 Potato cytosol 86.49 86.49
PGSC0003DMT400046820 Potato cytosol 86.49 86.49
Bra003951.1-P Field mustard cytosol 85.14 86.3
GSMUA_Achr1P21900_001 Banana cytosol 69.59 85.83
CDY23497 Canola cytosol, mitochondrion 36.49 85.71
GSMUA_Achr8P30580_001 Banana cytosol 56.76 84.85
Zm00001d022124_P001 Maize plasma membrane, plastid 83.11 84.83
EER99694 Sorghum cytosol 83.11 84.83
Bra007929.1-P Field mustard cytosol 81.76 82.88
Bra024577.1-P Field mustard cytosol 64.86 82.05
Bra016354.1-P Field mustard cytosol 81.08 81.63
EES06343 Sorghum cytosol 80.41 81.51
TraesCS2D01G178300.1 Wheat cytosol, golgi, unclear 78.38 80.0
Os02t0175600-01 Rice nucleus 77.7 79.86
Zm00001d015375_P001 Maize cytosol, mitochondrion, plastid 78.38 79.45
Os03t0408300-00 Rice nucleus 78.38 79.45
TraesCS2A01G170800.1 Wheat cytosol, nucleus 77.7 79.31
Os07t0613200-00 Rice nucleus 77.7 78.77
TraesCS2B01G197200.1 Wheat cytosol, golgi, unclear 76.35 77.93
GSMUA_Achr9P29110_001 Banana cytosol 57.43 76.58
Bra012370.1-P Field mustard cytosol, mitochondrion 79.73 75.64
AT1G12960.1 Thale cress nucleus 51.35 73.08
GSMUA_Achr6P06280_001 Banana nucleus 67.57 47.17
CDX80514 Canola plastid 54.05 34.63
VIT_00s1889g00010.t01 Wine grape plastid 0.0 0.0
Protein Annotations
EntrezGene:100817971MapMan:17.1.2.1.28Gene3D:3.100.10.10EMBL:ACUP02000044EMBL:BT092935UniProt:C6T670
EnsemblPlantsGene:GLYMA_01G026100GO:GO:0002181GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003735
GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005829GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0015934GO:GO:0019538GO:GO:0022625GO:GO:0030529EnsemblPlants:KRH74528
ProteinID:KRH74528ProteinID:KRH74528.1InterPro:L18e/L15P_sfHAMAP:MF_01341PFAM:PF00828ScanProsite:PS00475
PANTHER:PTHR11721PANTHER:PTHR11721:SF10InterPro:Ribosomal_L15InterPro:Ribosomal_L15_CSInterPro:Ribosomal_L18e/L15PSUPFAM:SSF52080
UniParc:UPI0001B16074SEG:seg::::
Description
hypothetical protein
Coordinates
chr1:+:2741832..2744918
Molecular Weight (calculated)
16608.6 Da
IEP (calculated)
11.414
GRAVY (calculated)
-0.577
Length
148 amino acids
Sequence
(BLAST)
001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GFFGKVGMRY FHKLRNKFYS PIVNIDKLWS LIPQDAKDKA LKSKDTAPLI
101: DVTQHGYFKV LGKGVLPQNQ PIVVKAKLIS KIAEKKIKEA GGAVLLTA
Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)
001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
Arabidopsis Description
RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.