Factsheet for Os07t0613200-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015375_P001	Maize	cytosol, mitochondrion, plastid	91.1	91.1
EES06343	Sorghum	cytosol	91.1	91.1
Os02t0175600-01	Rice	nucleus	86.99	88.19
GSMUA_Achr8P30580_001	Banana	cytosol	59.59	87.88
GSMUA_Achr1P21900_001	Banana	cytosol	71.92	87.5
Os03t0408300-00	Rice	nucleus	86.99	86.99
CDY23497	Canola	cytosol, mitochondrion	34.93	80.95
VIT_14s0066g00560.t01	Wine grape	cytosol	80.82	80.82
VIT_00s0225g00020.t01	Wine grape	cytosol	80.82	80.82
KRH63615	Soybean	endoplasmic reticulum, mitochondrion, nucleus	80.82	80.27
KRH54328	Soybean	cytosol	80.82	80.27
Bra003951.1-P	Field mustard	cytosol	80.14	80.14
VIT_17s0000g09110.t01	Wine grape	cytosol	80.14	80.14
Solyc06g071720.1.1	Tomato	nucleus	80.82	79.73
Solyc03g112360.1.1	Tomato	cytosol, nucleus, unclear	80.82	79.73
Bra024577.1-P	Field mustard	cytosol	63.7	79.49
KRH03232	Soybean	cytosol	79.45	79.45
KRH57125	Soybean	cytosol	79.45	79.45
PGSC0003DMT400046820	Potato	cytosol	80.14	79.05
PGSC0003DMT400069410	Potato	cytosol	80.14	79.05
Bra016354.1-P	Field mustard	cytosol	79.45	78.91
KRH69632	Soybean	cytosol	79.45	78.38
GSMUA_Achr9P29110_001	Banana	cytosol	59.59	78.38
KRH74528	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	78.77	77.7
Bra007929.1-P	Field mustard	cytosol	77.4	77.4
Bra012370.1-P	Field mustard	cytosol, mitochondrion	76.71	71.79
AT1G12960.1	Thale cress	nucleus	50.0	70.19
GSMUA_Achr6P06280_001	Banana	nucleus	69.86	48.11
CDX80514	Canola	plastid	50.0	31.6
VIT_12s0034g00430.t01	Wine grape	cytosol, plastid	2.05	2.8
VIT_12s0034g00440.t01	Wine grape	plastid	1.37	1.79
VIT_00s1889g00010.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.28	Gene3D:3.100.10.10	EntrezGene:4343884	ProteinID:BAC16490.1	ProteinID:BAC21322.1	ProteinID:BAF22168.1
ProteinID:BAT02622.1	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	InterPro:L18e/L15P_sf	HAMAP:MF_01341
EnsemblPlantsGene:Os07g0613200	EnsemblPlants:Os07t0613200-00	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR11721	PANTHER:PTHR11721:SF11
UniProt:Q8GSE9	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI00000AE498
RefSeq:XP_015644922.1	SEG:seg	:	:	:	:

Description

Similar to 60S ribosomal protein L27a-3. (Os07t0613200-00)

Coordinates

chr7:-:25236713..25237453

Molecular Weight (calculated)

16017.8 Da

IEP (calculated)

11.523

GRAVY (calculated)

-0.405

Length

146 amino acids

Sequence
(BLAST)

001: MTTSLRKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHRLRNKFYS PAVNVERLWS MVPAEQAAEA AGAGKAPLLD
101: VTQFGYFKVL GKGLLPEKPI VVKAKLISKV AEKKIKAAGG AVVLTA

Best Arabidopsis Sequence Match ( AT1G23290.1 )
(BLAST)

001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS SKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AB60S ribosomal protein L27a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.