Factsheet for VIT_00s0225g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g09110.t01	Wine grape	cytosol	92.47	92.47
VIT_14s0066g00560.t01	Wine grape	cytosol	90.41	90.41
GSMUA_Achr1P21900_001	Banana	cytosol	71.92	87.5
GSMUA_Achr8P30580_001	Banana	cytosol	58.22	85.86
Bra003951.1-P	Field mustard	cytosol	84.93	84.93
Bra007929.1-P	Field mustard	cytosol	84.25	84.25
Bra016354.1-P	Field mustard	cytosol	84.25	83.67
Zm00001d022124_P001	Maize	plasma membrane, plastid	82.88	83.45
EER99694	Sorghum	cytosol	82.88	83.45
Bra024577.1-P	Field mustard	cytosol	66.44	82.91
Os02t0175600-01	Rice	nucleus	81.51	82.64
Os03t0408300-00	Rice	nucleus	81.51	81.51
EES06343	Sorghum	cytosol	80.82	80.82
Os07t0613200-00	Rice	nucleus	80.82	80.82
Zm00001d015375_P001	Maize	cytosol, mitochondrion, plastid	80.14	80.14
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	79.45	80.0
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	78.77	79.31
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	78.08	78.62
Bra012370.1-P	Field mustard	cytosol, mitochondrion	82.88	77.56
GSMUA_Achr9P29110_001	Banana	cytosol	58.22	76.58
GSMUA_Achr6P06280_001	Banana	nucleus	69.86	48.11
VIT_12s0034g00430.t01	Wine grape	cytosol, plastid	2.05	2.8
VIT_12s0034g00440.t01	Wine grape	plastid	1.37	1.79
VIT_00s1889g00010.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

EntrezGene:100259736	wikigene:100259736	MapMan:17.1.2.1.28	Gene3D:3.100.10.10	UniProt:A5BKX2	EMBL:AM463018
EMBL:AM479864	ProteinID:CAN61498	ProteinID:CAN61498.1	ProteinID:CAN68574	ProteinID:CAN68574.1	ProteinID:CCB48309
ProteinID:CCB48309.1	EMBL:FN595256	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
InterPro:L18e/L15P_sf	EntrezGene:LOC100259736	wikigene:LOC100259736	HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475
PANTHER:PTHR11721	PANTHER:PTHR11721:SF10	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080
TIGR:TC66551	UniParc:UPI0001521314	ArrayExpress:VIT_00s0225g00020	EnsemblPlantsGene:VIT_00s0225g00020	EnsemblPlants:VIT_00s0225g00020.t01	unigene:Vvi.9145
RefSeq:XP_002272813	RefSeq:XP_002272813.1	RefSeq:XP_002272813.3	:	:	:

Description

No Description!

Coordinates

chrUn:+:14568870..14569535

Molecular Weight (calculated)

16360.3 Da

IEP (calculated)

11.277

GRAVY (calculated)

-0.465

Length

146 amino acids

Sequence
(BLAST)

001: MTTRFKKHRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNVDKLWS LIPQEVKAKA SPENAPMIDV
101: TQFGYVKVLG KGFLPESQPI VVKAKLISKV AEKKIKEAGG AVVLTA

Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.