Factsheet for GSMUA_Achr6P06280_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P21900_001	Banana	cytosol	52.83	93.33
GSMUA_Achr8P30580_001	Banana	cytosol	43.4	92.93
Os02t0175600-01	Rice	nucleus	50.47	74.31
CDY23497	Canola	cytosol, mitochondrion	21.7	73.02
Os03t0408300-00	Rice	nucleus	50.0	72.6
Zm00001d022124_P001	Maize	plasma membrane, plastid	49.53	72.41
EER99694	Sorghum	cytosol	49.53	72.41
Zm00001d015375_P001	Maize	cytosol, mitochondrion, plastid	49.53	71.92
Bra003951.1-P	Field mustard	cytosol	49.06	71.23
KRH54328	Soybean	cytosol	49.06	70.75
KRH63615	Soybean	endoplasmic reticulum, mitochondrion, nucleus	49.06	70.75
EES06343	Sorghum	cytosol	48.58	70.55
VIT_14s0066g00560.t01	Wine grape	cytosol	48.11	69.86
VIT_17s0000g09110.t01	Wine grape	cytosol	48.11	69.86
VIT_00s0225g00020.t01	Wine grape	cytosol	48.11	69.86
Os07t0613200-00	Rice	nucleus	48.11	69.86
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	47.64	69.66
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	47.64	69.66
Solyc03g112360.1.1	Tomato	cytosol, nucleus, unclear	48.58	69.59
Bra016354.1-P	Field mustard	cytosol	48.11	69.39
KRH57125	Soybean	cytosol	47.64	69.18
Bra007929.1-P	Field mustard	cytosol	47.64	69.18
KRH03232	Soybean	cytosol	47.64	69.18
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	47.17	68.97
PGSC0003DMT400046820	Potato	cytosol	48.11	68.92
Solyc06g071720.1.1	Tomato	nucleus	48.11	68.92
PGSC0003DMT400069410	Potato	cytosol	47.64	68.24
KRH69632	Soybean	cytosol	47.17	67.57
KRH74528	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	47.17	67.57
GSMUA_Achr9P29110_001	Banana	cytosol	35.38	67.57
Bra024577.1-P	Field mustard	cytosol	37.26	67.52
AT1G12960.1	Thale cress	nucleus	31.6	64.42
Bra012370.1-P	Field mustard	cytosol, mitochondrion	46.23	62.82
CDX80514	Canola	plastid	27.83	25.54
VIT_12s0034g00430.t01	Wine grape	cytosol, plastid	0.94	1.87
VIT_12s0034g00440.t01	Wine grape	plastid	0.94	1.79
VIT_00s1889g00010.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr6P06280_001	EnsemblPlants:GSMUA_Achr6T06280_001	EnsemblPlantsGene:GSMUA_Achr6G06280_001	Gene3D:3.100.10.10	InterPro:L18e/L15P_sf	InterPro:Ribosomal_L18e/L15P
PANTHER:PTHR11721	PANTHER:PTHR11721:SF10	PFAM:PF00828	SEG:seg	SUPFAM:SSF52080	UniParc:UPI0002951316
UniProt:M0T4M6	MapMan:17.1.2.1.28	:	:	:	:

Description

60S ribosomal protein L27a-3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G06280_001]

Coordinates

chr6:+:4234587..4240009

Molecular Weight (calculated)

24007.2 Da

IEP (calculated)

11.275

GRAVY (calculated)

-0.603

Length

212 amino acids

Sequence
(BLAST)

001: MDNLPYIQKF WKSEIRSHFQ PEEHFQYALV DQNILHEQIY IPSPQTNLIV QTQSHGRDLF SHFYMLGATA HLPSSPRRSP SRGGLEKPPS TAMTTRFKKN
101: RKKRGHVSAG HGRIGKHRKH PGGRGNAGGM HHHRILFDKY HPGYFGKVGM RYFHRLRNKF HCPALNVDRL WSLVPDAGML PPGRSVVVKA KLISKIAEKK
201: IKAAGGAVVL TA

Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.