Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 3
- mitochondrion 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s1889g00010.t01 | Wine grape | plastid | 58.88 | 61.76 |
| VIT_12s0034g00440.t01 | Wine grape | plastid | 64.49 | 61.61 |
| AT1G12960.1 | Thale cress | nucleus | 2.8 | 2.88 |
| Bra024577.1-P | Field mustard | cytosol | 2.8 | 2.56 |
| TraesCS2B01G197200.1 | Wheat | cytosol, golgi, unclear | 2.8 | 2.07 |
| TraesCS2A01G170800.1 | Wheat | cytosol, nucleus | 2.8 | 2.07 |
| TraesCS2D01G178300.1 | Wheat | cytosol, golgi, unclear | 2.8 | 2.07 |
| Bra003951.1-P | Field mustard | cytosol | 2.8 | 2.05 |
| Os07t0613200-00 | Rice | nucleus | 2.8 | 2.05 |
| VIT_00s0225g00020.t01 | Wine grape | cytosol | 2.8 | 2.05 |
| VIT_17s0000g09110.t01 | Wine grape | cytosol | 2.8 | 2.05 |
| Bra007929.1-P | Field mustard | cytosol | 2.8 | 2.05 |
| Bra016354.1-P | Field mustard | cytosol | 2.8 | 2.04 |
| GSMUA_Achr8P30580_001 | Banana | cytosol | 1.87 | 2.02 |
| GSMUA_Achr9P29110_001 | Banana | cytosol | 1.87 | 1.8 |
| GSMUA_Achr1P21900_001 | Banana | cytosol | 1.87 | 1.67 |
| Os02t0175600-01 | Rice | nucleus | 1.87 | 1.39 |
| EER99694 | Sorghum | cytosol | 1.87 | 1.38 |
| Zm00001d022124_P001 | Maize | plasma membrane, plastid | 1.87 | 1.38 |
| Os03t0408300-00 | Rice | nucleus | 1.87 | 1.37 |
| EES06343 | Sorghum | cytosol | 1.87 | 1.37 |
| VIT_14s0066g00560.t01 | Wine grape | cytosol | 1.87 | 1.37 |
| Zm00001d015375_P001 | Maize | cytosol, mitochondrion, plastid | 1.87 | 1.37 |
| Bra012370.1-P | Field mustard | cytosol, mitochondrion | 1.87 | 1.28 |
| GSMUA_Achr6P06280_001 | Banana | nucleus | 1.87 | 0.94 |
Protein Annotations
| Gene3D:3.100.10.10 | MapMan:35.2 | ProteinID:CCB48762 | ProteinID:CCB48762.1 | UniProt:F6H964 | EMBL:FN595497 |
| GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0022625 | InterPro:L18e/L15P_sf | PANTHER:PTHR11721 | PANTHER:PTHR11721:SF10 | SUPFAM:SSF52080 |
| UniParc:UPI000210A0D1 | ArrayExpress:VIT_12s0034g00430 | EnsemblPlantsGene:VIT_12s0034g00430 | EnsemblPlants:VIT_12s0034g00430.t01 | : | : |
Description
No Description!
Coordinates
chr12:-:15935675..15936058
Molecular Weight (calculated)
12217.9 Da
IEP (calculated)
8.808
GRAVY (calculated)
-0.137
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSASTRST LVAAEMLKVC ITTASFFDKH HPGNFGKVGM RHFHKLRIKL HCPIVHIDKL WSMVPPAAGT PSEGDFQAER QATEEMKFWA WWRWSPEPFF
101: LMMDLGL
101: LMMDLGL
001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS SKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
Arabidopsis Description
RPL27AB60S ribosomal protein L27a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR33]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.