Factsheet for GSMUA_Achr8P30580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23497	Canola	cytosol, mitochondrion	51.52	80.95
GSMUA_Achr1P21900_001	Banana	cytosol	97.98	80.83
AT1G12960.1	Thale cress	nucleus	69.7	66.35
Os02t0175600-01	Rice	nucleus	90.91	62.5
Os03t0408300-00	Rice	nucleus	89.9	60.96
Zm00001d022124_P001	Maize	plasma membrane, plastid	88.89	60.69
EER99694	Sorghum	cytosol	88.89	60.69
Zm00001d015375_P001	Maize	cytosol, mitochondrion, plastid	88.89	60.27
Bra003951.1-P	Field mustard	cytosol	87.88	59.59
Os07t0613200-00	Rice	nucleus	87.88	59.59
EES06343	Sorghum	cytosol	86.87	58.9
KRH54328	Soybean	cytosol	86.87	58.5
KRH63615	Soybean	endoplasmic reticulum, mitochondrion, nucleus	86.87	58.5
Bra007929.1-P	Field mustard	cytosol	85.86	58.22
VIT_00s0225g00020.t01	Wine grape	cytosol	85.86	58.22
VIT_14s0066g00560.t01	Wine grape	cytosol	85.86	58.22
KRH57125	Soybean	cytosol	85.86	58.22
VIT_17s0000g09110.t01	Wine grape	cytosol	85.86	58.22
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	84.85	57.93
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	84.85	57.93
KRH03232	Soybean	cytosol	84.85	57.53
Solyc03g112360.1.1	Tomato	cytosol, nucleus, unclear	85.86	57.43
Bra016354.1-P	Field mustard	cytosol	84.85	57.14
KRH69632	Soybean	cytosol	84.85	56.76
KRH74528	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	84.85	56.76
PGSC0003DMT400046820	Potato	cytosol	84.85	56.76
Solyc06g071720.1.1	Tomato	nucleus	84.85	56.76
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	82.83	56.55
PGSC0003DMT400069410	Potato	cytosol	83.84	56.08
GSMUA_Achr9P29110_001	Banana	cytosol	62.63	55.86
Bra024577.1-P	Field mustard	cytosol	63.64	53.85
Bra012370.1-P	Field mustard	cytosol, mitochondrion	80.81	51.28
GSMUA_Achr6P06280_001	Banana	nucleus	92.93	43.4
CDX80514	Canola	plastid	60.61	25.97
VIT_12s0034g00430.t01	Wine grape	cytosol, plastid	2.02	1.87
VIT_12s0034g00440.t01	Wine grape	plastid	2.02	1.79
VIT_00s1889g00010.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr8P30580_001	EnsemblPlants:GSMUA_Achr8T30580_001	EnsemblPlantsGene:GSMUA_Achr8G30580_001	Gene3D:3.100.10.10	InterPro:L18e/L15P_sf	InterPro:Ribosomal_L18e/L15P
PANTHER:PTHR11721	PANTHER:PTHR11721:SF10	PFAM:PF00828	SEG:seg	SUPFAM:SSF52080	UniParc:UPI000296B674
UniProt:M0TV10	MapMan:17.1.2.1.28	:	:	:	:

Description

60S ribosomal protein L27a-3 [Source:GMGC_GENE;Acc:GSMUA_Achr8G30580_001]

Coordinates

chr8:+:32587203..32587871

Molecular Weight (calculated)

10996.8 Da

IEP (calculated)

12.535

GRAVY (calculated)

-0.532

Length

99 amino acids

Sequence
(BLAST)

1: MTTRFRKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGMRYF HRLRNKFHCP AVNVDRLWSL VLGKGMLPPD RPVVVKAKLI SKIAEKKIKA AGGAVVLTA

Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.