Factsheet for Zm00001d022124_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99694	Sorghum	cytosol	99.31	99.31
Os03t0408300-00	Rice	nucleus	91.72	91.1
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	90.34	90.34
GSMUA_Achr1P21900_001	Banana	cytosol	74.48	90.0
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	89.66	89.66
GSMUA_Achr8P30580_001	Banana	cytosol	60.69	88.89
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	88.28	88.28
Os02t0175600-01	Rice	nucleus	87.59	88.19
Zm00001d015375_P001	Maize	cytosol, mitochondrion, plastid	88.28	87.67
VIT_14s0066g00560.t01	Wine grape	cytosol	86.21	85.62
VIT_17s0000g09110.t01	Wine grape	cytosol	84.83	84.25
KRH63615	Soybean	endoplasmic reticulum, mitochondrion, nucleus	84.83	83.67
KRH54328	Soybean	cytosol	84.83	83.67
Bra003951.1-P	Field mustard	cytosol	84.14	83.56
KRH74528	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	84.83	83.11
VIT_00s0225g00020.t01	Wine grape	cytosol	83.45	82.88
CDY23497	Canola	cytosol, mitochondrion	35.86	82.54
Solyc06g071720.1.1	Tomato	nucleus	84.14	82.43
KRH69632	Soybean	cytosol	84.14	82.43
Solyc03g112360.1.1	Tomato	cytosol, nucleus, unclear	84.14	82.43
KRH57125	Soybean	cytosol	82.76	82.19
PGSC0003DMT400046820	Potato	cytosol	83.45	81.76
PGSC0003DMT400069410	Potato	cytosol	83.45	81.76
Bra016354.1-P	Field mustard	cytosol	82.76	81.63
KRH03232	Soybean	cytosol	82.07	81.51
Bra007929.1-P	Field mustard	cytosol	81.38	80.82
Bra024577.1-P	Field mustard	cytosol	64.83	80.34
GSMUA_Achr9P29110_001	Banana	cytosol	59.31	77.48
Bra012370.1-P	Field mustard	cytosol, mitochondrion	80.0	74.36
AT1G12960.1	Thale cress	nucleus	51.03	71.15
GSMUA_Achr6P06280_001	Banana	nucleus	72.41	49.53
CDX80514	Canola	plastid	51.03	32.03
VIT_12s0034g00430.t01	Wine grape	cytosol, plastid	1.38	1.87
VIT_12s0034g00440.t01	Wine grape	plastid	1.38	1.79
VIT_00s1889g00010.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

EntrezGene:100286357	MapMan:17.1.2.1.28	Gene3D:3.100.10.10	UniProt:B4G0Z5	EMBL:BT043033	EMBL:EU976992
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0030529	InterPro:L18e/L15P_sf	HAMAP:MF_01341
ProteinID:ONM59578.1	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR11721	PANTHER:PTHR11721:SF11	InterPro:Ribosomal_L15
InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI00017B7A53	EnsemblPlantsGene:Zm00001d022124	EnsemblPlants:Zm00001d022124_P001
EnsemblPlants:Zm00001d022124_T001	:	:	:	:	:

Description

60S ribosomal protein L27a-3

Coordinates

chr7:-:170836044..170836481

Molecular Weight (calculated)

16052.9 Da

IEP (calculated)

11.372

GRAVY (calculated)

-0.506

Length

145 amino acids

Sequence
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFYC PAVNIERLWS MVPTDKAAEA GGDKAPQIDV
101: TQFGYFKVLG KGVLPPKPIV VKAKLISKVA EKKIKAAGGA VVLTA

Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.