Factsheet for Bra007929.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66307	Canola	cytosol	97.95	97.95
CDY09461	Canola	cytosol	97.95	97.95
CDY61221	Canola	cytosol	97.26	97.26
Bra003951.1-P	Field mustard	cytosol	96.58	96.58
AT1G70600.1	Thale cress	cytosol	95.89	95.89
Bra016354.1-P	Field mustard	cytosol	93.15	92.52
Bra024577.1-P	Field mustard	cytosol	73.97	92.31
GSMUA_Achr1P21900_001	Banana	cytosol	71.23	86.67
GSMUA_Achr8P30580_001	Banana	cytosol	58.22	85.86
VIT_17s0000g09110.t01	Wine grape	cytosol	85.62	85.62
VIT_14s0066g00560.t01	Wine grape	cytosol	84.93	84.93
Bra012370.1-P	Field mustard	cytosol, mitochondrion	90.41	84.62
VIT_00s0225g00020.t01	Wine grape	cytosol	84.25	84.25
KRH57125	Soybean	cytosol	84.25	84.25
KRH03232	Soybean	cytosol	83.56	83.56
KRH54328	Soybean	cytosol	82.88	82.31
KRH63615	Soybean	endoplasmic reticulum, mitochondrion, nucleus	82.88	82.31
Solyc03g112360.1.1	Tomato	cytosol, nucleus, unclear	82.88	81.76
KRH74528	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	82.88	81.76
KRH69632	Soybean	cytosol	82.88	81.76
Zm00001d022124_P001	Maize	plasma membrane, plastid	80.82	81.38
EER99694	Sorghum	cytosol	80.82	81.38
PGSC0003DMT400046820	Potato	cytosol	82.19	81.08
Solyc06g071720.1.1	Tomato	nucleus	81.51	80.41
PGSC0003DMT400069410	Potato	cytosol	80.82	79.73
EES06343	Sorghum	cytosol	79.45	79.45
Os03t0408300-00	Rice	nucleus	78.08	78.08
Os02t0175600-01	Rice	nucleus	76.71	77.78
Zm00001d015375_P001	Maize	cytosol, mitochondrion, plastid	77.4	77.4
Os07t0613200-00	Rice	nucleus	77.4	77.4
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	76.71	77.24
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	76.03	76.55
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	74.66	75.17
GSMUA_Achr9P29110_001	Banana	cytosol	56.85	74.77
GSMUA_Achr6P06280_001	Banana	nucleus	69.18	47.64
VIT_12s0034g00430.t01	Wine grape	cytosol, plastid	2.05	2.8
VIT_12s0034g00440.t01	Wine grape	plastid	1.37	1.79
VIT_00s1889g00010.t01	Wine grape	plastid	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.28	Gene3D:3.100.10.10	EnsemblPlantsGene:Bra007929	EnsemblPlants:Bra007929.1	EnsemblPlants:Bra007929.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009506	GO:GO:0009987	GO:GO:0015934	GO:GO:0016020	GO:GO:0019538	GO:GO:0022625
GO:GO:0022626	GO:GO:0030529	GO:GO:0042788	InterPro:L18e/L15P_sf	UniProt:M4CUN4	HAMAP:MF_01341
PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR11721	PANTHER:PTHR11721:SF10	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS
InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI0002546A58	:	:	:

Description

AT1G70600 (E=5e-081) | structural constituent of ribosome

Coordinates

chrA02:-:11933364..11933804

Molecular Weight (calculated)

16341.3 Da

IEP (calculated)

11.316

GRAVY (calculated)

-0.501

Length

146 amino acids

Sequence
(BLAST)

001: MTTRFKKNRK KGGHVSAGHG RIGKHRKHPG GRGNAGGMHH LRILFDKYHP GYFGKVGIRY FHKLRNKFFC PIVNLDRLWS LVPEDVKAKA TKDKVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.