CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54328	Soybean	cytosol	100.0	100.0
KRH03232	Soybean	cytosol	91.84	92.47
KRH57125	Soybean	cytosol	91.16	91.78
KRH74528	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	91.84	91.22
KRH69632	Soybean	cytosol	89.8	89.19
GSMUA_Achr1P21900_001	Banana	cytosol	71.43	87.5
GSMUA_Achr8P30580_001	Banana	cytosol	58.5	86.87
Bra003951.1-P	Field mustard	cytosol	85.03	85.62
Zm00001d022124_P001	Maize	plasma membrane, plastid	83.67	84.83
EER99694	Sorghum	cytosol	83.67	84.83
Bra007929.1-P	Field mustard	cytosol	82.31	82.88
Bra016354.1-P	Field mustard	cytosol	81.63	81.63
Bra024577.1-P	Field mustard	cytosol	64.63	81.2
Os07t0613200-00	Rice	nucleus	80.27	80.82
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	79.59	80.69
EES06343	Sorghum	cytosol	79.59	80.14
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	78.91	80.0
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	78.91	80.0
Os02t0175600-01	Rice	nucleus	78.23	79.86
GSMUA_Achr9P29110_001	Banana	cytosol	59.86	79.28
Os03t0408300-00	Rice	nucleus	78.23	78.77
Zm00001d015375_P001	Maize	cytosol, mitochondrion, plastid	77.55	78.08
Bra012370.1-P	Field mustard	cytosol, mitochondrion	80.27	75.64
AT1G12960.1	Thale cress	nucleus	52.38	74.04
GSMUA_Achr6P06280_001	Banana	nucleus	70.75	49.06

Protein Annotations

EntrezGene:100798197	EntrezGene:100802235	MapMan:17.1.2.1.28	Gene3D:3.100.10.10	EMBL:ACUP02002703	EMBL:ACUP02003514
EMBL:BT090242	UniProt:C6SYJ4	EnsemblPlantsGene:GLYMA_04G187500	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625
GO:GO:0030529	ProteinID:KRH54328.1	EnsemblPlants:KRH63615	ProteinID:KRH63615	ProteinID:KRH63615.1	InterPro:L18e/L15P_sf
HAMAP:MF_01341	PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR11721	PANTHER:PTHR11721:SF10	InterPro:Ribosomal_L15
InterPro:Ribosomal_L15_CS	InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI0001B15871	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:45828903..45830112

Molecular Weight (calculated)

16546.5 Da

IEP (calculated)

11.414

GRAVY (calculated)

-0.573

Length

147 amino acids

Sequence
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GFFGKVGMRY FHKLRNKFYS PILNIDKLWS LVPQEVKDKA SKENKAPLID
101: VTQFGYFKVL GKGVLPQNQP VVVKAKLISK IAEKKIKEAG GAVVLTA

Best Arabidopsis Sequence Match ( AT1G70600.1 )
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AC60S ribosomal protein L27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P49637]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.