CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57125	Soybean	cytosol	97.95	97.95
KRH63615	Soybean	endoplasmic reticulum, mitochondrion, nucleus	92.47	91.84
KRH54328	Soybean	cytosol	92.47	91.84
KRH74528	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	91.1	89.86
KRH69632	Soybean	cytosol	89.04	87.84
GSMUA_Achr1P21900_001	Banana	cytosol	70.55	85.83
Bra003951.1-P	Field mustard	cytosol	85.62	85.62
GSMUA_Achr8P30580_001	Banana	cytosol	57.53	84.85
Bra007929.1-P	Field mustard	cytosol	83.56	83.56
EER99694	Sorghum	cytosol	81.51	82.07
Zm00001d022124_P001	Maize	plasma membrane, plastid	81.51	82.07
Bra024577.1-P	Field mustard	cytosol	65.75	82.05
Bra016354.1-P	Field mustard	cytosol	82.19	81.63
Os07t0613200-00	Rice	nucleus	79.45	79.45
EES06343	Sorghum	cytosol	79.45	79.45
TraesCS2A01G170800.1	Wheat	cytosol, nucleus	78.08	78.62
TraesCS2B01G197200.1	Wheat	cytosol, golgi, unclear	78.08	78.62
Os02t0175600-01	Rice	nucleus	77.4	78.47
TraesCS2D01G178300.1	Wheat	cytosol, golgi, unclear	77.4	77.93
Zm00001d015375_P001	Maize	cytosol, mitochondrion, plastid	77.4	77.4
Os03t0408300-00	Rice	nucleus	76.71	76.71
GSMUA_Achr9P29110_001	Banana	cytosol	57.53	75.68
Bra012370.1-P	Field mustard	cytosol, mitochondrion	80.82	75.64
AT1G12960.1	Thale cress	nucleus	52.05	73.08
GSMUA_Achr6P06280_001	Banana	nucleus	69.18	47.64

Protein Annotations

EntrezGene:100305936	MapMan:17.1.2.1.28	Gene3D:3.100.10.10	EMBL:ACUP02010339	EMBL:BT089780	EMBL:BT096051
UniProt:C6SX86	EnsemblPlantsGene:GLYMA_17G085400	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	GO:GO:0030529
EnsemblPlants:KRH03232	ProteinID:KRH03232	ProteinID:KRH03232.1	ProteinID:KRH03233.1	InterPro:L18e/L15P_sf	HAMAP:MF_01341
PFAM:PF00828	ScanProsite:PS00475	PANTHER:PTHR11721	PANTHER:PTHR11721:SF10	InterPro:Ribosomal_L15	InterPro:Ribosomal_L15_CS
InterPro:Ribosomal_L18e/L15P	SUPFAM:SSF52080	UniParc:UPI0001B1521A	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:+:6583181..6584505

Molecular Weight (calculated)

16402.3 Da

IEP (calculated)

11.395

GRAVY (calculated)

-0.553

Length

146 amino acids

Sequence
(BLAST)

001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GFFGKVGMRY FHKLRNKFYN PIINIDKLWS LLPQEAKDKA TADKAPLLDV
101: TQFGYFKVLG KGVLPQNQPL VVKAKLISKI AEKKIKEAGG AVVLTA

Best Arabidopsis Sequence Match ( AT1G23290.1 )
(BLAST)

001: MATALKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS SKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA

Arabidopsis Description

RPL27AB60S ribosomal protein L27a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.