Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015733.1-P | Field mustard | plastid | 69.4 | 68.89 |
| CDX87586 | Canola | plastid | 67.91 | 67.41 |
| CDX88298 | Canola | plastid | 61.19 | 61.19 |
| Os08t0513100-01 | Rice | cytosol, nucleus | 23.88 | 50.0 |
| PGSC0003DMT400025712 | Potato | plastid | 43.28 | 47.54 |
| VIT_18s0122g00460.t01 | Wine grape | plastid | 45.52 | 45.52 |
| Solyc04g082910.1.1 | Tomato | plastid | 25.37 | 39.08 |
| KXG25621 | Sorghum | plastid | 38.81 | 37.96 |
| AT2G47400.1 | Thale cress | plastid | 32.09 | 34.68 |
| AT3G62410.1 | Thale cress | plastid | 30.6 | 31.3 |
Protein Annotations
| MapMan:35.1 | EntrezGene:843989 | UniProt:A0A178WDK7 | ProteinID:AAG51942.1 | ProteinID:AEE35859.1 | EMBL:AK227842 |
| ArrayExpress:AT1G76560 | EnsemblPlantsGene:AT1G76560 | RefSeq:AT1G76560 | TAIR:AT1G76560 | RefSeq:AT1G76560-TAIR-G | EnsemblPlants:AT1G76560.1 |
| TAIR:AT1G76560.1 | EMBL:AY085359 | EMBL:BT004753 | Symbol:CP12-3 | ncoils:Coil | InterPro:DUF_CP12 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005507 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005975 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0015979 | GO:GO:0016151 |
| GO:GO:0019253 | GO:GO:0032991 | GO:GO:0034605 | GO:GO:0043234 | GO:GO:0071454 | GO:GO:0080153 |
| RefSeq:NP_565134.1 | ProteinID:OAP15575.1 | PFAM:PF02672 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PANTHER:PTHR33921 | PANTHER:PTHR33921:SF2 | UniProt:Q9C9K2 | SMART:SM01093 | UniParc:UPI000000C467 |
| SEG:seg | : | : | : | : | : |
Description
CP12-3CP12-3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDK7]
Coordinates
chr1:+:28728206..28728976
Molecular Weight (calculated)
15449.4 Da
IEP (calculated)
4.618
GRAVY (calculated)
-0.688
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MISGSATASH GRVLLPSQRE RRPVSTGSNI LRFRETVPRQ FSLMMVTKAT AKYMGTKMRE EKLSEMIEEK VKEATEVCEA EEMSEECRVA WDEVEEVSQA
101: RADLRIKLKL LNQDPLESFC QENPETDECR IYED
101: RADLRIKLKL LNQDPLESFC QENPETDECR IYED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.